Harnessing beneficial microbes presents a promising strategy to optimize plant growth and agricultural sustainability. Little is known to which extent and how specifically soil and plant microbiomes can be manipulated through different cropping practices. Here, we investigated soil and wheat root microbial communities in a cropping system experiment consisting of conventional and organic managements, both with different tillage intensities. While microbial richness was marginally affected, we found pronounced cropping effects on community composition, which were specific for the respective microbiomes. Soil bacterial communities were primarily structured by tillage, whereas soil fungal communities responded mainly to management type with additional effects by tillage. In roots, management type was also the driving factor for bacteria but not for fungi, which were generally determined by changes in tillage intensity. To quantify an “effect size” for microbiota manipulation, we found that about 10% of variation in microbial communities was explained by the tested cropping practices. Cropping sensitive microbes were taxonomically diverse, and they responded in guilds of taxa to the specific practices. These microbes also included frequent community members or members co-occurring with many other microbes in the community, suggesting that cropping practices may allow manipulation of influential community members. Understanding the abundance patterns of cropping sensitive microbes presents the basis towards developing microbiota management strategies for smart farming. For future targeted microbiota management—e.g., to foster certain microbes with specific agricultural practices—a next step will be to identify the functional traits of the cropping sensitive microbes.

Considering agroecosystem multifunctionality is essential for designing sustainable cropping systems.

Agricultural production is under threat of water scarcity due to increasingly frequent and severe drought events under climate change. Whether a change in cropping systems can be used as an effective adaptation strategy against drought is still unclear. We investigated how plant water uptake patterns of a field-grown pea–barley (Pisum sativum L. and Hordeum vulgare L.) mixture, an important fodder intercrop, responded to experimental drought under four cropping systems, i.e. organic intensive tillage, conventional intensive tillage, conventional no tillage, and organic reduced tillage. Drought was simulated after crop establishment using rain shelters. Proportional contributions to plant water uptake from different soil layers were estimated based on stable water isotopes using Bayesian mixing models. Pea plants always took up proportionally more water from shallower depths than barley plants. Water uptake patterns of neither species were affected by cropping systems. Both species showed similar responses to the drought simulation and increased their proportional water uptake from the shallow soil layer (0–20 cm) in all cropping systems. Our results highlight the impact of drought on plant water uptake patterns for two important crop species and suggest that cropping systems might not be as successful as adaptation strategies against drought as previously thought.

Reducing soil tillage can lead to many benefits, but this practice often increases weed abundance and thus the need for herbicides, especially during the transition phase from inversion tillage to non-inversion tillage. We evaluated if subsidiary crops (SCs, e.g., cover crops) can mitigate the effects of non-inversion tillage on weed abundance. Two-year experiments studying SC use, tillage intensity, and nitrogen (N) fertilization level were carried out twice at six sites throughout northern and central Europe. SCs significantly reduced weed cover throughout the intercrop period (−55% to −1% depending on site), but only slightly during the main crops. Overall weed abundance and weed biomass were higher when using non-inversion tillage with SCs compared to inversion tillage without SCs. The effects differed due to site-specific weed pressure and management. With increasing weed pressure, the effect of SCs decreased, and the advantage of inversion over non-inversion tillage increased. N fertilization level did not affect weed abundance. The results suggest that SCs can contribute by controlling weeds but cannot fully compensate for reduced weed control of non-inversion tillage in the transition phase. Using non-inversion tillage together with SCs is primarily recommended in low weed pressure environments.