João Gabriel Silva

Mr. João Gabriel Silva

Institute of Interdisciplinary Research, University of Coimbra, Coimbra, Portugal
+1
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 September 2019 in Metabolites
Verified
Journal Article
Open access
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MPMariana Palma
Mariana Palma
LTLudgero Tavares
Ludgero Tavares
JRJoão Rito
João Rito
LHLuís F. Henriques
Luís F. Henriques
João Gabriel SilvaJoão Gabriel Silva
João Gabriel Silva
Ivan ViegasIvan Viegas
Ivan Viegas
The sustainable growth of fish aquaculture will require the procurement of non-marine feed sources. Glycerol is a potential feed supplement whose metabolism may spare the catabolism of dietary amino acids, thereby extending the use of the feed protein to other physiological functions such as growth. In the present study, the effects of dietary glycerol supplementation on the muscle and liver metabolomes of rainbow trout (Oncorhynchus mykiss) and European seabass (Dicentrarchus labrax) were evaluated. Fish juveniles were fed diets with 0%, 2.5%, and 5% glycerol. Muscle and liver aqueous fractions were extracted and 1H NMR spectra were acquired. Metabolite profiles derived from the 1H NMR signals were assessed using univariate and multivariate statistical analyses. The adenylate energy charge was determined in the muscle. For both species, the muscle metabolite profile showed more variability compared to that of the liver and was most perturbed by the 5.0% glycerol diet. For the liver metabolite profile, rainbow trout showed fewer differences compared to European seabass. No differences were observed in energy charge between experimental groups for either species. Thus, rainbow trout appeared to be less susceptible to tissue metabolite perturbations, compared to seabass, when the diet was supplemented with up to 5% glycerol.

30 July 2020 in Scientific Reports
Verified
Journal Article
Open access
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GDGiada DiNunzio
Giada DiNunzio
GBGetachew D. Belew
Getachew D. Belew
ATAlejandra N. Torres
Alejandra N. Torres
João Gabriel SilvaJoão Gabriel Silva
João Gabriel Silva
LSLuis P. Silva
Luis P. Silva
John JonesJohn Jones
John Jones
Excessive sugar intake including high-fructose corn syrup (HFCS) is implicated in the rise of obesity, insulin resistance and non-alcoholic fatty liver disease. Liver glycogen synthesis is influenced by both fructose and insulin signaling. Therefore, the effect of HFCS on hepatic glycogenesis was evaluated in mice feeding ad-libitum. Using deuterated water: the fraction of glycogen derived from triose-P sources, Krebs cycle substrates, and direct pathway + cycling, was measured in 9 normal-chow fed mice (NC) and 12 mice fed normal chow plus a 55% fructose/45% glucose mix in the drinking water at 30% w/v (HFCS-55). This was enriched with [U-13C]fructose or [U-13C]glucose to determine the contribution of each to glycogenesis. For NC, direct pathway + cycling, Krebs cycle, and triose-P sources accounted for 66 ± 0.7%, 23 ± 0.8% and 11 ± 0.4% of glycogen synthesis, respectively. HFCS-55 mice had similar direct pathway + cycling (64 ± 1%) but lower Krebs cycle (12 ± 1%, p < 0.001) and higher triose-P contributions (24 ± 1%, p < 0.001). HFCS-55-fructose contributed 17 ± 1% via triose-P and 2 ± 0% via Krebs cycle. HFCS-55-glucose contributed 16 ± 3% via direct pathway and 1 ± 0% via Krebs cycle. In conclusion, HFCS-55 supplementation resulted in similar hepatic glycogen deposition rates. Indirect pathway contributions shifted from Krebs cycle to Triose-P sources reflecting HFCS-55-fructose utilization, while HFCS-55-glucose was incorporated almost exclusively by the direct pathway.

19 November 2022 in Metabolites
Verified
Journal Article
Open access
PDF file
Ivan ViegasIvan Viegas
Ivan Viegas
GNGiada Di Nunzio
Giada Di Nunzio
Getachew Debas BelewGetachew Debas Belew
Getachew Debas Belew
ATAlejandra N. Torres
Alejandra N. Torres
João Gabriel SilvaJoão Gabriel Silva
João Gabriel Silva
John JonesJohn Jones
John Jones
Dietary glucose and fructose are both efficiently assimilated by the liver but a comprehensive measurement of this process starting from their conversion to sugar phosphates, involvement of the pentose phosphate pathway (PPP), and conversion to glycogen and lipid storage products, remains incomplete. Mice were fed a chow diet supplemented with 35 g/100 mL drinking water of a 55/45 fructose/glucose mixture for 18 weeks. On the final night, the sugar mixture was enriched with either [U-13C]glucose or [U-13C]fructose, and deuterated water (2H2O) was also administered. 13C-isotopomers representing newly synthesized hepatic glucose-6-phosphate (glucose-6-P), glycerol-3-phosphate, and lipogenic acetyl-CoA were quantified by 2H and 13C NMR analysis of post-mortem liver glycogen and triglyceride. These data were applied to a metabolic model covering glucose-6-P, PPP, triose-P, and de novo lipogenesis (DNL) fluxes. The glucose supplement was converted to glucose-6-P via the direct pathway, while the fructose supplement was metabolized by the liver to gluconeogenic triose-P via fructokinase–aldolase–triokinase. Glucose-6-P from all carbohydrate sources accounted for 40–60% of lipogenic acetyl-CoA and 10–12% was oxidized by the pentose phosphate pathway (PPP). The yield of NADPH from PPP flux accounted for a minority (~30%) of the total DNL requirement. In conclusion, this approach integrates measurements of glucose-6-P, PPP, and DNL fluxes to provide a holistic and informative assessment of hepatic glucose and fructose metabolism.

17 April 2020 in Magnetic Resonance in Medicine
Verified
Journal Article
Closed access
PDF file
GBGetachew D. Belew
Getachew D. Belew
GNGiada Di Nunzio
Giada Di Nunzio
LTLudgero Tavares
Ludgero Tavares
João Gabriel SilvaJoão Gabriel Silva
João Gabriel Silva
ATAlejandra N. Torres
Alejandra N. Torres
John JonesJohn Jones
John Jones

13 April 2025 in Journal of Proteome Research
Verified
Journal Article
Open access
João Gabriel SilvaJoão Gabriel Silva
João Gabriel Silva
LTLudgero Tavares
Ludgero Tavares
GBGetachew D. Belew
Getachew D. Belew
JRJoão A. Rodrigues
João A. Rodrigues
RARita Araújo
Rita Araújo
John JonesJohn Jones
John Jones
Background: Metabolic dysfunction-associated steatotic liver disease (MASLD) can be recapitulated in mice fed a high-fat diet. The development of MASLD and the diet per se can both perturb metabolism in key extrahepatic tissues such as the heart, kidney, and skeletal muscle. To date, these alterations have not been well described in this animal model of diet-induced MASLD. Methodology: Male C57BL/6J mice were fed either standard (SC, n = 12) or high-fat chow (HF, n = 11) for 18 weeks. Metabolites were extracted from the heart, kidney, and skeletal muscle and analyzed by 1H nuclear magnetic resonance (NMR) spectroscopy, along with multivariate and univariate statistical analyses. Results: Kidney metabolite profiles exhibited the largest differences between HF and SC diets, followed by those of skeletal muscle and then the heart. Some alterations were common across all tissues, namely decreased trimethylamine and elevated levels of linoleic acid and polyunsaturated fatty acids in HF compared to SC (p < 0.05 for all three metabolites). Overall, the metabolite variations were consistent with shifts in carbohydrate and lipid substrate selection for oxidation, increased tissue stress in the heart and kidneys, and altered choline metabolism. These findings may serve as additional important descriptors of MASLD onset and progression.

15 June 2026 in Acta Pharmaceutica Sinica B
Verified
Journal Article
Open access
HLHong-Toan Lai
Hong-Toan Lai
DDDaniela Dias-Pedroso
Daniela Dias-Pedroso
MCMaria Eugenia MARQUES DA COSTA
Maria Eugenia MARQUES DA COSTA
RFRomain Fernandes
Romain Fernandes
TNTran Ngoc Anh Nguyen
Tran Ngoc Anh Nguyen
CBCatherine Brenner
Catherine Brenner
Cancer metabolism depends on multifaceted mechanisms, including bidirectional inter-organelle communication between mitochondria and the nucleus, facilitating cellular adaptation at the transcriptomic, proteomic, and metabolomic levels. The mitochondrial protein complex composed of apoptosis-inducing factor (AIF) and coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (CHCHD4) is essential for this mitochondrio-nuclear communication. The AIF/CHCHD4 complex mediates the mitochondrial import of cysteine-enriched nuclear gene-encoded proteins, thereby adapting the mitochondrial proteome to cellular energy demands. Here, we report the discovery of M30-E05, a compound that binds to the NADH pocket of AIF, preventing its dimerization and disrupting the AIF/CHCHD4 complex, as demonstrated by molecular docking and gel electrophoresis analysis of mitochondrial AIF/CHCHD4 substrate expression. In cancer cells, M30-E05 reduces the expression of nuclear gene-encoded mitochondrial proteins such as AIF, CHCHD4, cytochrome c oxidase copper chaperone (COX17), and Mitochondrial calcium uptake 1 (MICU1). In addition, M30-E05 fragments the mitochondrial network and impairs mitochondrial respiration, causing profound alterations, particularly in glucose, lipid, and amino acid metabolism, as revealed by kinetic measurements of oxygen consumption and mass spectrometric metabolomics. Importantly, M30-E05 significantly reduces the viability of a human adult and pediatric osteosarcoma cancer cell panel, including those from patient-derived xenografts (PDX) of osteosarcomas, and induces apoptosis. When orally administered for two weeks to immunodeficient NSG mice, M30-E05 inhibited tumor growth in a subcutaneous PDX xenograft model without apparent toxicity. We anticipate that M30-E05, as a first-in-class metabolic inhibitor, could serve as the lead compound for a new class of antineoplastic agents.