Joseph Cook

Dr. Joseph Cook

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Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 July 2014 in BioScience
Verified
Journal Article
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JCJoseph Cook
Joseph Cook
SEScott V. Edwards
Scott V. Edwards
ELEileen A. Lacey
Eileen A. Lacey
RGRobert P. Guralnick
Robert P. Guralnick
PSPamela S. Soltis
Pamela S. Soltis
SIStefanie Ickert-Bond
Stefanie Ickert-Bond
There is an emerging consensus that undergraduate biology education in the United States is at a crucial juncture, especially as we acknowledge the need to train a new generation of scientists to meet looming environmental and health crises. Digital resources for biology now available online provide an opportunity to transform biology curricula to include more authentic and inquiry-driven educational experiences. Digitized natural history collections have become tremendous assets for research in environmental and health sciences, but, to date, these data remain largely untapped by educators. Natural history collections have the potential to help transform undergraduate science education from passive learning into an active exploration of the natural world, including the exploration of the complex relationships among environmental conditions, biodiversity, and human well-being. By incorporating natural history specimens and their associated data into undergraduate curricula, educators can promote participatory learning and foster an understanding of essential interactions between organisms and their environments.

7 October 2016 in BioScience
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Journal Article
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JCJoseph Cook
Joseph Cook
SGStephen E. Greiman
Stephen E. Greiman
SASalvatore J. Agosta
Salvatore J. Agosta
RARobert P. Anderson
Robert P. Anderson
BABrian S. Arbogast
Brian S. Arbogast
EHEric P. Hoberg
Eric P. Hoberg

28 December 2019 in Journal of Mammalogy
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Journal Article
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DJDonavan J Jackson
Donavan J Jackson
JCJoseph Cook
Joseph Cook
Conservation efforts rely on robust taxonomic assessments that should be based on critical assessment of interspecific boundaries, infraspecific variation, and potentially distinctive peripheral populations. The meadow vole (Microtus pennsylvanicus) is widely distributed across North America, including 28 morphologically defined subspecies and numerous isolated populations. Because some subspecies are of high conservation concern, we examined geographic variation across the range of the species to test existing infraspecific taxonomy in terms of local and regional diversification. We sequenced mitochondrial DNA (mtDNA) from 20 subspecies of M. pennsylvanicus and contextualized infraspecific variation through comparison of pairwise genetic distances derived from an extended data set of 63 species of Microtus. We found strong support for at least three divergent clades within M. pennsylvanicus, with observed intraspecific clade divergence exceeding that between several pairwise comparisons of sister species within Microtus. Six nuclear genes were then sequenced to test the validity of mtDNA structure and to further evaluate the possibility of cryptic, species-level diversity using Bayes factor species delimitation (BFD) analyses. BFD consistently and decisively supported multiple species based on the multilocus approach. We propose that taxonomic revision of the meadow vole is required, with the eastern clade now identified as M. pennsylvanicus (Ord 1815), the western clade as M. drummondii (Audubon and Bachman 1853), and the coastal Florida clade as M. dukecampbelli (Woods, Post, and Kilpatrick 1982). We suggest that such an arrangement would more closely reflect evolutionary history and provide critical context for further examination of distinctive southern peripheral populations that harbor novel evolutionary legacies and adaptive potential.

1 July 2015 in Comparative Parasitology
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Journal Article
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KBKayce C. Bell
Kayce C. Bell
DMDiego Matek
Diego Matek
JDJohn R. Demboski
John R. Demboski
JCJoseph Cook
Joseph Cook
Biological inventories often miss parasites, a critical component of biodiversity, and even well-studied host species generally have a paucity of parasite records. Efforts to document the host diversity and distribution of parasites can use newly collected specimens as well as museum specimens. We focus on a group of widespread, well-documented hosts, western North American chipmunks (Rodentia: genus Tamias). Field-collected and museum specimens of chipmunks from across western North America were examined externally for sucking lice (Anoplura), and gastrointestinal tracts were examined for pinworms (Oxyuriodea). We documented new hosts and expanded the geographic distribution for four parasite taxa under investigation: Hoplopleura arboricola, Neohaematopinus pacificus, Heteroxynema cucullatum, and Rauschtineria eutamii. This effort demonstrates the utility of museum collections as well as the pressing need for continued field collection to characterize global biodiversity.

11 July 2019 in Viruses
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Journal Article
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SLSchuyler Liphardt
Schuyler Liphardt
HKHae Ji Kang
Hae Ji Kang
LDLaurie Dizney
Laurie Dizney
LRLuis A. Ruedas
Luis A. Ruedas
JCJoseph Cook
Joseph Cook
Richard YanagiharaRichard Yanagihara
Richard Yanagihara
Orthohantaviruses are tightly linked to the ecology and evolutionary history of their mammalian hosts. We hypothesized that in regions with dramatic climate shifts throughout the Quaternary, orthohantavirus diversity and evolution are shaped by dynamic host responses to environmental change through processes such as host isolation, host switching, and reassortment. Jemez Springs virus (JMSV), an orthohantavirus harbored by the dusky shrew (Sorex monticola) and five close relatives distributed widely in western North America, was used to test this hypothesis. Total RNAs, extracted from liver or lung tissue from 164 shrews collected from western North America during 1983–2007, were analyzed for orthohantavirus RNA by reverse transcription polymerase chain reaction (RT-PCR). Phylogenies inferred from the L-, M-, and S-segment sequences of 30 JMSV strains were compared with host mitochondrial cytochrome b. Viral clades largely corresponded to host clades, which were primarily structured by geography and were consistent with hypothesized post-glacial expansion. Despite an overall congruence between host and viral gene phylogenies at deeper scales, phylogenetic signals were recovered that also suggested a complex pattern of host switching and at least one reassortment event in the evolutionary history of JMSV. A fundamental understanding of how orthohantaviruses respond to periods of host population expansion, contraction, and secondary host contact is the key to establishing a framework for both more comprehensive understanding of orthohantavirus evolutionary dynamics and broader insights into host–pathogen systems.

13 March 2019 in Journal of Mammalogy
Verified
Journal Article
Closed access
JCJoseph Cook
Joseph Cook
WGWilliam L Gannon
William L Gannon
MMMichael A Mares
Michael A Mares
KPKaren E Petersen
Karen E Petersen
DWDon E Wilson
Don E Wilson