Daniel Gapes

Dr. Daniel Gapes

orcid

Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2014 in Bioresource Technology
Verified
Journal Article
Closed access
KHKevin Hii
Kevin Hii
SBSaeid Baroutian
Saeid Baroutian
RPRajarathinam Parthasarathy
Rajarathinam Parthasarathy
DGDaniel Gapes
Daniel Gapes
NENicky Eshtiaghi
Nicky Eshtiaghi

1 July 2013 in Bioresource Technology
Verified
Journal Article
Closed access
SBSaeid Baroutian
Saeid Baroutian
NENicky Eshtiaghi
Nicky Eshtiaghi
DGDaniel Gapes
Daniel Gapes

4 August 2017 in The ISME Journal
Verified
Journal Article
Open access
PDF file
CCCarlo R Carere
Carlo R Carere
KHKiel Hards
Kiel Hards
KHKaren M Houghton
Karen M Houghton
JPJean F Power
Jean F Power
BMBen McDonald
Ben McDonald
MSMatthew Stott
Matthew Stott
Aerobic methanotrophic bacteria have evolved a specialist lifestyle dependent on consumption of methane and other short-chain carbon compounds. However, their apparent substrate specialism runs contrary to the high relative abundance of these microorganisms in dynamic environments, where the availability of methane and oxygen fluctuates. In this work, we provide in situ and ex situ evidence that verrucomicrobial methanotrophs are mixotrophs. Verrucomicrobia-dominated soil communities from an acidic geothermal field in Rotokawa, New Zealand rapidly oxidised methane and hydrogen simultaneously. We isolated and characterised a verrucomicrobial strain from these soils, Methylacidiphilum sp. RTK17.1, and showed that it constitutively oxidises molecular hydrogen. Genomic analysis confirmed that this strain encoded two [NiFe]-hydrogenases (group 1d and 3b), and biochemical assays revealed that it used hydrogen as an electron donor for aerobic respiration and carbon fixation. While the strain could grow heterotrophically on methane or autotrophically on hydrogen, it grew optimally by combining these metabolic strategies. Hydrogen oxidation was particularly important for adaptation to methane and oxygen limitation. Complementary to recent findings of hydrogenotrophic growth by Methylacidiphilum fumariolicum SolV, our findings illustrate that verrucomicrobial methanotrophs have evolved to simultaneously utilise hydrogen and methane from geothermal sources to meet energy and carbon demands where nutrient flux is dynamic. This mixotrophic lifestyle is likely to have facilitated expansion of the niche space occupied by these microorganisms, allowing them to become dominant in geothermally influenced surface soils. Genes encoding putative oxygen-tolerant uptake [NiFe]-hydrogenases were identified in all publicly available methanotroph genomes, suggesting hydrogen oxidation is a general metabolic strategy in this guild.

1 October 2017 in Water Research
Verified
Journal Article
Closed access
AYAzadeh Yousefifar
Azadeh Yousefifar
SBSaeid Baroutian
Saeid Baroutian
Mohammed M. FaridMohammed M. Farid
Mohammed M. Farid
DGDaniel Gapes
Daniel Gapes
BYBrent R. Young
Brent R. Young

1 January 2015 in Chemical Engineering Journal
Verified
Journal Article
Closed access
SBSaeid Baroutian
Saeid Baroutian
ASAnne-Marie Smit
Anne-Marie Smit
JAJohn Andrews
John Andrews
BYBrent Young
Brent Young
DGDaniel Gapes
Daniel Gapes