Despite extensive culling of common vampire bats in Latin America, lethal human rabies outbreaks transmitted by this species are increasingly recognized, and livestock rabies occurs with striking frequency. To identify the individual and population-level factors driving rabies virus (RV) transmission in vampire bats, we conducted a longitudinal capture–recapture study in 20 vampire bat colonies spanning four regions of Peru. Serology demonstrated the circulation of RV in vampire bats from all regions in all years. Seroprevalence ranged from 3 to 28 per cent and was highest in juvenile and sub-adult bats. RV exposure was independent of bat colony size, consistent with an absence of population density thresholds for viral invasion and extinction. Culling campaigns implemented during our study failed to reduce seroprevalence and were perhaps counterproductive for disease control owing to the targeted removal of adults, but potentially greater importance of juvenile and sub-adult bats for transmission. These findings provide new insights into the mechanisms of RV maintenance in vampire bats and highlight the need for ecologically informed approaches to rabies prevention in Latin America.

The Andes-Amazon basin of Peru and Bolivia is one of the most data-poor, biologically rich, and rapidly changing areas of the world. Conservation scientists agree that this area hosts extremely high endemism, perhaps the highest in the world, yet we know little about the geographic distributions of these species and ecosystems within country boundaries. To address this need, we have developed conservation data on endemic biodiversity (~800 species of birds, mammals, amphibians, and plants) and terrestrial ecological systems (~90; groups of vegetation communities resulting from the action of ecological processes, substrates, and/or environmental gradients) with which we conduct a fine scale conservation prioritization across the Amazon watershed of Peru and Bolivia. We modelled the geographic distributions of 435 endemic plants and all 347 endemic vertebrate species, from existing museum and herbaria specimens at a regional conservation practitioner's scale (1:250,000-1:1,000,000), based on the best available tools and geographic data. We mapped ecological systems, endemic species concentrations, and irreplaceable areas with respect to national level protected areas. We found that sizes of endemic species distributions ranged widely (< 20 km² to > 200,000 km²) across the study area. Bird and mammal endemic species richness was greatest within a narrow 2500-3000 m elevation band along the length of the Andes Mountains. Endemic amphibian richness was highest at 1000-1500 m elevation and concentrated in the southern half of the study area. Geographical distribution of plant endemism was highly taxon-dependent. Irreplaceable areas, defined as locations with the highest number of species with narrow ranges, overlapped slightly with areas of high endemism, yet generally exhibited unique patterns across the study area by species group. We found that many endemic species and ecological systems are lacking national-level protection; a third of endemic species have distributions completely outside of national protected areas. Protected areas cover only 20% of areas of high endemism and 20% of irreplaceable areas. Almost 40% of the 91 ecological systems are in serious need of protection (= < 2% of their ranges protected). We identify for the first time, areas of high endemic species concentrations and high irreplaceability that have only been roughly indicated in the past at the continental scale. We conclude that new complementary protected areas are needed to safeguard these endemics and ecosystems. An expansion in protected areas will be challenged by geographically isolated micro-endemics, varied endemic patterns among taxa, increasing deforestation, resource extraction, and changes in climate. Relying on pre-existing collections, publically accessible datasets and tools, this working framework is exportable to other regions plagued by incomplete conservation data.

At least 193 species of mammals are known to occur within the Manu Biosphere Reserve in south‐eastern Peru, contributing to its stature as one of the world's richest protected areas. Bats (Order Chiroptera) comprise more than 42% (82 species) of this diversity. Analyses of bat capture records over a transect extending more than 3 km in elevation show that most bat species at Manu are widely distributed in the Amazon Basin. Few are montane endemics or are localized in south‐eastern Peru, although exceptions to this generalization include two species new to science. Highland bat faunas tend to be attenuated versions of those found below, and the elevational zonation of bat communities is weak. Species turnover with elevation is monotonic and more‐or‐less smooth, with Jaccard's similarity values falling to 0.5 for sites differing by 750m in elevation. Subtle and orderly change in species composition with elevation is also reflected in the nested‐subset structure of these communities; over 19 different levels, this pattern of hierarchical structure is both striking and highly significant. Elevational ranges of species generally increase with elevation, in accordance with Stevens' extension of ‘Rapoport's rule’ of range amplitude. However, support for ‘Stevens' rule’ may be trivial, given Amazonian richness and Andean impoverishment. Reduced richness and poorly developed endemism in Andean bat communities contrast with patterns shown by sympatric rodent faunas, which are diverse and strongly endemic on the Altiplano and markedly zoned along the Eastern Versant. Contrasts are less sharp with bird communities, which nevertheless exhibit stronger zonation and higher endemicity. Factors responsible for these distinctive distributional patterns are discussed.