Yoshiki Murakami

Prof. Yoshiki Murakami

Tokyo Medical University

Research Focus & Metrics

Academic Career Length

36Years (1991-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2021 in Molecular Therapy - Methods & Clinical Development
Verified
Journal Article
Open access
TUTomohiro Umezu
Tomohiro Umezu
MTMasakatsu Takanashi
Masakatsu Takanashi
YMYoshiki Murakami
Yoshiki Murakami
SOShin-Ichiro Ohno
Shin-Ichiro Ohno
KKKohsuke Kanekura
Kohsuke Kanekura
MKMasahiko Kuroda
Masahiko Kuroda
Extracellular vesicles derived from mammalian cells could be useful carriers for drug delivery systems (DDSs); however, with regard to clinical application, there are several issues to be overcome. Acerola (Malpighia emarginata DC.) is a popular health food. In this study, the feasibility of orally administered nucleic acid drug delivery by acerola exosome-like nanoparticles (AELNs) was examined. AELNs were recovered from acerola juice using an affinity column instead of ultracentrifugation. MicroRNA (miRNA) was sufficiently encapsulated in AELNs by 30-min incubation on ice and was protected against RNase, strong acid, and base treatments. The administration of an AELN/miRNA mixture in cells achieved downregulation of the miRNA’s target gene, and this mixture showed cytoplasmic localization. AELNs orally delivered small RNA to the digestive system in vivo. The target gene-suppressing effect in the small intestine and liver peaked 1 day after administration, indicating potential for use as an oral DDS for nucleic acid in the digestive system.

18 September 2020 in Laboratory Investigation
Verified
Journal Article
Closed access
PDF file
ASAkira Saito
Akira Saito
HTHidenori Toyoda
Hidenori Toyoda
MKMasaharu Kobayashi
Masaharu Kobayashi
YKYoshinori Koiwa
Yoshinori Koiwa
HFHiroki Fujii
Hiroki Fujii
MKMasahiko Kuroda
Masahiko Kuroda

3 November 2019 in Biomedicines
Verified
Journal Article
Open access
PDF file
SISaori Itami-Matsumoto
Saori Itami-Matsumoto
MHMichiyo Hayakawa
Michiyo Hayakawa
SUSawako Uchida-Kobayashi
Sawako Uchida-Kobayashi
Masaru EnomotoMasaru Enomoto
Masaru Enomoto
ATAKIHIRO TAMORI
AKIHIRO TAMORI
YMYoshiki Murakami
Yoshiki Murakami
Direct-acting antiviral (DAA) therapy for chronic hepatitis C virus (HCV) infection patients (CH) results in a sustained viral response (SVR) in over 95% of patients. However, hepatocellular carcinoma (HCC) occurs in 1–5% of patients who achieved an SVR after treatment with interferon. We attempted to develop a minimally invasive and highly reliable method of predicting the occurrence and recurrence of HCC in patients who achieved an SVR with DAA therapy. The exosomal miRNA expression patterns of 69 CH patients who underwent HCC curative treatment and 70 CH patients were assessed using microarray analysis. We identified a miRNA expression pattern characteristic of SVR-HCC by using machine learning. Twenty-five of 69 patients had HCC recurrence. The expression of four exosomal miRNAs predicted HCC recurrence with 85.3% accuracy. Fifteen of 70 patients had HCC occurrence. The expression of four exosomal miRNAs predicted the onset of HCC with 85.5% accuracy. The expression patterns of miR-4718, 642a-5p, 6826-3p, and 762 in exosomes were positively correlated with those in the liver, and downregulation of these miRNAs induced cell proliferation and prevented apoptosis in vitro. Aberrant expression of four miRNAs, which was used for prediction, was associated with HCC onset after HCV eradication. Expression patterns of exosomal miRNAs are a promising tool to predict SVR-HCC.

23 June 2022 in Ultramicroscopy
Verified
Journal Article
Closed access
TSTakehito Seki
Takehito Seki
KKKushagra Khare
Kushagra Khare
YMYoshiki Murakami
Yoshiki Murakami
STSatoko Toyama
Satoko Toyama
GSGabriel Sánchez-Santolino
Gabriel Sánchez-Santolino
NSNaoya Shibata
Naoya Shibata

10 December 2020 in Scientific Reports
Verified
Journal Article
Open access
PDF file
TUTomohiro Umezu
Tomohiro Umezu
KTKoichi Tsuneyama
Koichi Tsuneyama
KKKohsuke Kanekura
Kohsuke Kanekura
MHMichiyo Hayakawa
Michiyo Hayakawa
TTToshihito Tanahashi
Toshihito Tanahashi
YMYoshiki Murakami
Yoshiki Murakami
Streptozotocin administration to mice (STZ-mice) induces type I diabetes and hepatocellular carcinoma (HCC). We attempted to elucidate the carcinogenic mechanism and the miRNA expression status in the liver and blood during the precancerous state. Serum and liver tissues were collected from STZ-mice and non-treated mice (CTL-mice) at 6, 10, and 12 W. The exosome enriched fraction extracted from serum was used. Hepatic histological examination and hepatic and exosomal miRNA expression analysis were serially performed using next-generation sequencing (NGS). Human miRNA expression analysis of chronic hepatitis liver tissue and exosomes, which were collected before starting the antiviral treatment, were also performed. No inflammation or fibrosis was found in the liver of CTL-mice during the observation period. In STZ-mice, regeneration and inflammation of hepatocytes was found at 6 W and nodules of atypical hepatocytes were found at 10 and 12 W. In the liver tissue, during 6–12 W, the expression levels of let-7f-5p, miR-143-3p, 148a-3p, 191-5p, 192-5p, 21a-5p, 22-3p, 26a-5p, and 92a-3p was significantly increased in STZ-mice, and anti-oncogenes of their target gene candidates were down-regulated. miR-122-5p was also significantly down-regulated in STZ-mice. Fifteen exosomal miRNAs were upregulated in STZ-mice. Six miRNAs (let-7f-5p, miR-10b-5p, 143-3p, 191-5p, 21a-5p, and 26a-5p) were upregulated, similarly to human HCC cases. From the precancerous state, aberrant expression of hepatic miRNAs has already occurred, and then, it can promote carcinogenesis. In exosomes, the expression pattern of common miRNAs between mice and humans before carcinogenesis was observed and can be expected to be developed as a cancer predictive marker.

8 January 2020 in Scientific Reports
Verified
Journal Article
Open access
PDF file
MHMichiyo Hayakawa
Michiyo Hayakawa
HUHideaki Umeyama
Hideaki Umeyama
MIMitsuo Iwadate
Mitsuo Iwadate
Y-H. TaguchiY-H. Taguchi
Y-H. Taguchi
YYYoshihiko Yano
Yoshihiko Yano
YMYoshiki Murakami
Yoshiki Murakami
Nucleos(t)ide analog (NA) therapy has proven effective in treating chronic hepatitis B. However, NAs frequently result in viral relapse after the cessation of therapy. This is because NAs cannot fully eliminate the viral episomal covalently closed circular DNA (cccDNA) in the nucleus. In this study, we identified small molecular compounds that control host factors related to viral replication using in silico screening with simulated annealing based on bioinformatics for protein-ligand flexible docking. Twelve chemical compound candidates for alpha-glucosidase (AG) inhibitors were identified from a library of chemical compounds and used to treat fresh human hepatocytes infected with HBV. They were then monitored for their anti-viral effects. HBV replication was inhibited by one candidate (1-[3-(4-tert-butylcyclohexyl)oxy-2-hydroxypropyl]-2,2,6,6-tetramethylpiperidin-4-ol) in a dose-dependent manner. This compound significantly reduced ccc DNA production, compared to Entecavir (p < 0.05), and had a lower anti-AG effect. Gene expression analysis and structural analysis of this compound showed that its inhibitive effect on HBV was via interaction with Sp1. The nuclear transcription factor Sp1 acts on multiple regions of HBV to suppress HBV replication. Identifying candidates that control nuclear transcription factors facilitate the development of novel therapies. Drugs with a mechanism different from NA are promising for the elimination of HBV.