Yusuke Kurose

Dr. Yusuke Kurose

RCAST, The University of Tokyo, Tokyo, Japan
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2021 in Medical Image Analysis
Verified
Journal Article
Open access
KKKazuma Kobayashi
Kazuma Kobayashi
RHRyuichiro Hataya
Ryuichiro Hataya
YKYusuke Kurose
Yusuke Kurose
MMMototaka Miyake
Mototaka Miyake
Masamichi TakahashiMasamichi Takahashi
Masamichi Takahashi
Ryuji HamamotoRyuji Hamamoto
Ryuji Hamamoto
In medical imaging, the characteristics purely derived from a disease should reflect the extent to which abnormal findings deviate from the normal features. Indeed, physicians often need corresponding images without abnormal findings of interest or, conversely, images that contain similar abnormal findings regardless of normal anatomical context. This is called comparative diagnostic reading of medical images, which is essential for a correct diagnosis. To support comparative diagnostic reading, content-based image retrieval (CBIR) that can selectively utilize normal and abnormal features in medical images as two separable semantic components will be useful. In this study, we propose a neural network architecture to decompose the semantic components of medical images into two latent codes: normal anatomy code and abnormal anatomy code. The normal anatomy code represents counterfactual normal anatomies that should have existed if the sample is healthy, whereas the abnormal anatomy code attributes to abnormal changes that reflect deviation from the normal baseline. By calculating the similarity based on either normal or abnormal anatomy codes or the combination of the two codes, our algorithm can retrieve images according to the selected semantic component from a dataset consisting of brain magnetic resonance images of gliomas. Moreover, it can utilize a synthetic query vector combining normal and abnormal anatomy codes from two different query images. To evaluate whether the retrieved images are acquired according to the targeted semantic component, the overlap of the ground-truth labels is calculated as metrics of the semantic consistency. Our algorithm provides a flexible CBIR framework by handling the decomposed features with qualitatively and quantitatively remarkable results.

8 December 2023 in Medical Image Analysis
Verified
Journal Article
Open access
KKKazuma Kobayashi
Kazuma Kobayashi
LGLin Gu
Lin Gu
RHRyuichiro Hataya
Ryuichiro Hataya
TMTakaaki Mizuno
Takaaki Mizuno
MMMototaka Miyake
Mototaka Miyake
Ryuji HamamotoRyuji Hamamoto
Ryuji Hamamoto
The volume of medical images stored in hospitals is rapidly increasing; however, the utilization of these accumulated medical images remains limited. Existing content-based medical image retrieval (CBMIR) systems typically require example images, leading to practical limitations, such as the lack of customizable, fine-grained image retrieval, the inability to search without example images, and difficulty in retrieving rare cases. In this paper, we introduce a sketch-based medical image retrieval (SBMIR) system that enables users to find images of interest without the need for example images. The key concept is feature decomposition of medical images, which allows the entire feature of a medical image to be decomposed into and reconstructed from normal and abnormal features. Building on this concept, our SBMIR system provides an easy-to-use two-step graphical user interface: users first select a template image to specify a normal feature and then draw a semantic sketch of the disease on the template image to represent an abnormal feature. The system integrates both types of input to construct a query vector and retrieves reference images. For evaluation, ten healthcare professionals participated in a user test using two datasets. Consequently, our SBMIR system enabled users to overcome previous challenges, including image retrieval based on fine-grained image characteristics, image retrieval without example images, and image retrieval for rare cases. Our SBMIR system provides on-demand, customizable medical image retrieval, thereby expanding the utility of medical image databases.

17 March 2023 in Biomedicines
Verified
Journal Article
Open access
PDF file
ANAyako Nakada
Ayako Nakada
RNRyota Niikura
Ryota Niikura
KOKeita Otani
Keita Otani
YKYusuke Kurose
Yusuke Kurose
YHYoshito Hayashi
Yoshito Hayashi
MFMitsuhiro Fujishiro
Mitsuhiro Fujishiro
The use of computer-aided detection models to diagnose lesions in images from wireless capsule endoscopy (WCE) is a topical endoscopic diagnostic solution. We revised our artificial intelligence (AI) model, RetinaNet, to better diagnose multiple types of lesions, including erosions and ulcers, vascular lesions, and tumors. RetinaNet was trained using the data of 1234 patients, consisting of images of 6476 erosions and ulcers, 1916 vascular lesions, 7127 tumors, and 14,014,149 normal tissues. The mean area under the receiver operating characteristic curve (AUC), sensitivity, and specificity for each lesion were evaluated using five-fold stratified cross-validation. Each cross-validation set consisted of between 6,647,148 and 7,267,813 images from 217 patients. The mean AUC values were 0.997 for erosions and ulcers, 0.998 for vascular lesions, and 0.998 for tumors. The mean sensitivities were 0.919, 0.878, and 0.876, respectively. The mean specificities were 0.936, 0.969, and 0.937, and the mean accuracies were 0.930, 0.962, and 0.924, respectively. We developed a new version of an AI-based diagnostic model for the multiclass identification of small bowel lesions in WCE images to help endoscopists appropriately diagnose small intestine diseases in daily clinical practice.

10 October 2019 in arXiv
Verified
Preprint
Open access
PDF file
STShusuke Takahama
Shusuke Takahama
YKYusuke Kurose
Yusuke Kurose
YMYusuke Mukuta
Yusuke Mukuta
HAHiroyuki Abe
Hiroyuki Abe
MFMasashi Fukayama
Masashi Fukayama
THTatsuya Harada
Tatsuya Harada
Histopathological image analysis is an essential process for the discovery of diseases such as cancer. However, it is challenging to train CNN on whole slide images (WSIs) of gigapixel resolution considering the available memory capacity. Most of the previous works divide high resolution WSIs into small image patches and separately input them into the model to classify it as a tumor or a normal tissue. However, patch-based classification uses only patch-scale local information but ignores the relationship between neighboring patches. If we consider the relationship of neighboring patches and global features, we can improve the classification performance. In this paper, we propose a new model structure combining the patch-based classification model and whole slide-scale segmentation model in order to improve the prediction performance of automatic pathological diagnosis. We extract patch features from the classification model and input them into the segmentation model to obtain a whole slide tumor probability heatmap. The classification model considers patch-scale local features, and the segmentation model can take global information into account. We also propose a new optimization method that retains gradient information and trains the model partially for end-to-end learning with limited GPU memory capacity. We apply our method to the tumor/normal prediction on WSIs and the classification performance is improved compared with the conventional patch-based method.

7 March 2023 in arXiv
Verified
Preprint
Open access
PDF file
KKKazuma Kobayashi
Kazuma Kobayashi
LGLin Gu
Lin Gu
RHRyuichiro Hataya
Ryuichiro Hataya
TMTakaaki Mizuno
Takaaki Mizuno
MMMototaka Miyake
Mototaka Miyake
Ryuji HamamotoRyuji Hamamoto
Ryuji Hamamoto
The amount of medical images stored in hospitals is increasing faster than ever; however, utilizing the accumulated medical images has been limited. This is because existing content-based medical image retrieval (CBMIR) systems usually require example images to construct query vectors; nevertheless, example images cannot always be prepared. Besides, there can be images with rare characteristics that make it difficult to find similar example images, which we call isolated samples. Here, we introduce a novel sketch-based medical image retrieval (SBMIR) system that enables users to find images of interest without example images. The key idea lies in feature decomposition of medical images, whereby the entire feature of a medical image can be decomposed into and reconstructed from normal and abnormal features. By extending this idea, our SBMIR system provides an easy-to-use two-step graphical user interface: users first select a template image to specify a normal feature and then draw a semantic sketch of the disease on the template image to represent an abnormal feature. Subsequently, it integrates the two kinds of input to construct a query vector and retrieves reference images with the closest reference vectors. Using two datasets, ten healthcare professionals with various clinical backgrounds participated in the user test for evaluation. As a result, our SBMIR system enabled users to overcome previous challenges, including image retrieval based on fine-grained image characteristics, image retrieval without example images, and image retrieval for isolated samples. Our SBMIR system achieves flexible medical image retrieval on demand, thereby expanding the utility of medical image databases.

15 November 2024
Verified
Book Chapter
Open access
PDF file
THTatsuya Harada
Tatsuya Harada
LGLin Gu
Lin Gu
YMYusuke Mukuta
Yusuke Mukuta
JSJun Suzuki
Jun Suzuki
YKYusuke Kurose
Yusuke Kurose
To increase productivity, it is expected that a single user is able to operate multiple cybernetic avatars (CAs). However, the limited attention span of the user makes it difficult to send direct instructions to all CAs. Therefore, this chapter describes the essential technologies for CAs that solve these problems and behave autonomously according to the user's intentions. First, the realization of spatio-temporal recognition capabilities that enable CAs to move autonomously in an environments that change from moment to moment is described. Following that, methods to implement continuous learning and memory mechanisms to facilitate acquired information reuse in the future are described. In general, the observed data are time series, and future predictions are important to provide appropriate support to users. The time series analysis method is then explained, which is the most important technology. Advanced natural language processing technology is necessary to capture intentions through dialogue with the user and to process large amounts of textual data as prior knowledge and common sense. Examples of the application of these fundamental technologies in the medical field are also presented.