Neolamarckia cadamba (Roxb.) Bosser is a tropical evergreen broadleaf tree species that could play an important role in meeting the increasing demand for wood products. However, multi-level genetic variation and selection efficiency for growth traits in N. cadamba is poorly characterized. We therefore investigated the efficiency of early selection in N. cadamba by monitoring the height (HT), diameter at breast height (DBH), and tree volume (V) in 39 half-sib families from 11 provenances at ages 2, 3, 4, 5, and 6 years in a progeny test. Age-related trends in growth rate, genetic parameters in multi-level, efficiency of early selection, and realized gain in multi-level for growth traits were analyzed. The result showed that genetic variation among families within provenances was higher than that among provenances. The estimated individual heritability values for the growth traits ranged from 0.05 to 0.26, indicating that the variation of growth traits in N. cadamba was subject to weak or intermediate genetic control. The age–age genetic correlations for growth traits were always positive and high (0.51–0.99), and the relationships between the genetic/phenotypic correlations and the logarithm of the age ratio (LAR) were described well by linear models (R² > 0.85, except the fitting coefficient of genetic correlation and LAR for HT was 0.35). On the basis of an early selection efficiency analysis, we found that it is the best time to perform early selection for N. cadamba at age 5 before half-rotation, and the selection efficiencies were 157.28%, 151.56%, and 127.08% for V, DBH, and HT, respectively. Higher realized gain can be obtained by selecting superior trees from superior families. These results can be expected to provide theoretical guidance and materials for breeding programs in N. cadamba and can even be a reference for breeding strategies of other fast-growing tree species.

Neolamarckia cadamba is an indigenous, timber-producing tree species in Southern China that plays an important role in the sustainable development of the local forestry industry. However, the geographic genetic variation across its natural distribution area in Southern China has yet to be characterized for best utilization. Here, we report the geographic genetic variation in growth and wood properties of N. cadamba from 10 provenances that represent the entire natural distribution of N. cadamba in Southern China. There was significant geographic variation in diameter breast height (DBH), height (H), volume (V), vessel length (VL), vessel diameter (VD), VL/VD, and wood basic density (WBD). The variation in tree volume across provenances was greater than that of other growth traits, indicating that volume has a greater potential for selection in provenance trials. The provenance heritabilities of growth traits and wood properties ranged from 0.59 to 0.67 and from 0.40 to 0.45, respectively. Trend surface analysis revealed that patterns of geographic variation associated with growth traits were weakly negatively correlated with those of wood properties. The pattern of geographic variation in growth traits showed a gradual increase from the periphery to the central region, whereas wood properties showed the opposite pattern, and latitude had the greatest effect on both. Wood property measurements suggested that the YNMS provenance produced superior timber wood, whereas the GXLZ, GXFCG, and GXNN provenances produced the best pulpwood. These provenances could potentially provide more valuable breeding materials for the genetic improvement of N. cadamba.

Neolamarckia cadamba (Roxb.) Bosser is a fast-growing deciduous tree species and belongs to the Neolamarckia genus of the Rubiaceae family. This species has great economic and medical values in addition to being an important timber species for multiple industrial purposes. However, few studies have examined the genetic diversity and population structure in the natural distribution of this species in China. Here, we applied both the haploid nrDNA ITS (619 bp for aligned sequences) and mtDNA (2 polymorphic loci) markers to investigate 10 natural populations (239 individuals in total) that covered most of the distribution of the species in China. The results showed that the nucleotide diversity was $\pi$ = 0.1185 ± 0.0242 for the nrDNA ITS markers and $\pi$ = 0.00038 ± 0.00052 for the mtDNA markers. The haplotype diversity for the mtDNA markers was $h$ = 0.1952 ± 0.2532. The population genetic differentiation was small ($F_{st\left(n\right)}$ = 0.0294) for the nrDNA ITS markers but large ($F_{st\left(m\right)}$ = 0.6765) for the mtDNA markers. There were no significant effects of isolation by distance (IBD), by elevation, and by two climatic factors (annual average precipitation and tem perature). A geographic structure among populations ($N_{st}<G_{st}$) was absent. Phylogenetic analysis showed a highly genetic mixture among individuals of the ten populations. Pollen flow was substantially greater than seed flow ($m_p/m_s \gg$ 1.0) and played a dominant role in shaping population genetic structure. The nrDNA ITS sequences were neutral and all local populations did not undergo demographic expansion. The overall results provide fundamental information for the genetic conservation and breeding of this miraculous tree.

Neolamarckia cadamba (N. cadamba) is a fast-growing tree species with tremendous economic and ecological value; the study of the key genes regulating photosynthesis and sugar accumulation is very important for the breeding of N. cadamba. Fructose 1,6-bisphosptase (FBP) gene has been found to play a key role in plant photosynthesis, sugar accumulation and other growth processes. However, no systemic analysis of FBPs has been reported in N. cadamba. A total of six FBP genes were identifed and cloned based on the N. cadamba genome, and these FBP genes were sorted into four groups. The characteristics of the NcFBP gene family were analyzed such as phylogenetic relationships, gene structures, conserved motifs, and expression patterns. A cis-acting element related to circadian control was first found in the promoter region of FBP gene. Phylogenetic and quantitative real-time PCR analyses showed that NcFBP5 and NcFBP6 may be chloroplast type 1 FBP and cytoplasmic FBP, respectively. FBP proteins from N. cadamba and 22 other plant species were used for phylogenetic analyses, indicating that FBP family may have expanded during the evolution of algae to mosses and differentiated cpFBPase1 proteins in mosses. This work analyzes the internal relationship between the evolution and expression of the six NcFBPs, providing a scientific basis for the evolutionary pattern of plant FBPs, and promoting the functional studies of FBP genes.

Neolamarckia cadamba, a member of the Rubiaceae family, is widely distributed throughout South Asia and South China. In order to acquire reliable and repeatable results, the use of a suitable internal reference gene to normalize the RT-qPCR data is essential. In this study, we reported the validation of housekeeping genes to identify the most suitable internal reference gene(s) for normalization of qPCR data obtained among different tissues (bud, leaf, cambium region) under different hormone stresses. Here, ΔCt, geNorm, NormFinder, and BestKeeper analyses were carried out to analyze the normalization of qPCR data of twenty-one reference gene families (ACT, CAC, CYP, EF1α, eIF, FPS1, FBK, GAPDH, RAN, PEPKR1, PP2A, RPL, RPS, RuBP, SAMDC, TEF, Tub-α, Tub-β, UBCE, UBQ, UPL) including 43 genes. The results showed that FPS1, RPL, and FBK were the most stable reference genes across all of the tested samples. In addition, the expression of NcEXPA8, one gene of interest that plays an important role in regulating cell wall extension, under different phytohormone stresses was used to further confirm the validated reference genes. Taken together, our results provide guidelines for reference gene selection under different phytohormone stresses and a foundation for more accurate and widespread use of RT-qPCR in N. cadamba.

Neolamarckia cadamba (N. cadamba) is an evergreen tree species known for its rapid growth, remarkable wood properties, and significant value in medicine, feeding, and landscape. In order to clone a N. cadamba individual with excellent genotype, a plant regeneration protocol was successfully established with leaves wrapped by bud scales as explants. The optimal sterilization method for the leaves was 0.1% Mercury Chloride (HgCl₂) treatment for 1 min before culturing on Murashige and Skoog’s medium (MS) supplemented with 3.0 mg/L Thidiazuron (TDZ), 0.1 mg/L 2–4 Dichlorophenoxyacetic acid (2-4D), 0.05 mg/L α-Naphthaleneacetic acid (NAA) and 1 mL/L Plant Preservative Mixture (PPM) to induce calluses. The medium containing 1 mL/L PPM could effectively inhibit explant contamination without an unfavorable impact on the final induction rate of callus from the leaves. Three types of calluses were induced from the leaves cultured on the above medium. Among them, only the Type II callus, which was green and nodular, had few particle masses, could differentiate into adventitious shoots on the MS medium supplemented with 1.5 mg/L 6–Benzylaminopurine (6-BA) and 0.05 mg/L NAA, with the induction rate of 78.89% and adventitious shoot number per callus of 11.67. The adventitious shoots were proliferated on the MS medium supplemented with 1.0 mg/L 6-BA and 0.05 mg/L Indole-3- butyric acid (IBA) with the proliferation coefficient of 3.37. And the micro-shoots developed roots in the MS medium supplemented with 0.05 mg/L NAA and 0.05 mg/L IBA. The regeneration protocol can be used in the propagation and large scale production of seedlings with the same genotype as an excellent individual of N. cadamba in the field.