Katjana Ehrlich

Dr. Katjana Ehrlich

Biomedical Engineering, University of California, Davis, Davis, California, USA
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
4 May 2017 in Optics Express
Verified
Journal Article
Open access
PDF file
AKA. Kufcsák
A. Kufcsák
AEA. Erdogan
A. Erdogan
RWR. Walker
R. Walker
KEKatjana Ehrlich
Katjana Ehrlich
MTMichael Tanner
Michael Tanner
NKNikola Krstajić
Nikola Krstajić
A SPAD-based line sensor fabricated in 130 nm CMOS technology capable of acquiring time-resolved fluorescence spectra (TRFS) in 8.3 milliseconds is presented. To the best of our knowledge, this is the fastest time correlated single photon counting (TCSPC) TRFS acquisition reported to date. The line sensor is an upgrade to our prior work and incorporates: i) parallelized interface from sensor to surrounding circuitry enabling high line rate to the PC (19,000 lines/s) and ii) novel time-gating architecture where detected photons in the OFF region are rejected digitally after the output stage of the SPAD. The time-gating architecture was chosen to avoid electrical transients on the SPAD high voltage supplies when gating is achieved by excess bias modulation. The time-gate has an adjustable location and time window width allowing the user to focus on time-events of interest. On-chip integrated center-of-mass (CMM) calculations provide efficient acquisition of photon arrivals and direct lifetime estimation of fluorescence decays. Furthermore, any of the SPC, TCSPC and on-chip CMM modes can be used in conjunction with the time-gating. The higher readout rate and versatile architecture greatly empower the user and will allow widespread applications across many techniques and disciplines. Here we focused on 3 examples of TRFS and time-gated Raman spectroscopy: i) kinetics of chlorophyll A fluorescence from an intact leaf; ii) kinetics of a thrombin biosensor FRET probe from quenched to fluorescence states; iii) ex vivo mouse lung tissue autofluorescence TRFS; iv) time-gated Raman spectroscopy of toluene at 3056 cm−1 peak. To the best of our knowledge, we detect spectrally for the first time the fast rise in fluorescence lifetime of chlorophyll A in a measurement over single fluorescent transient.

27 November 2017 in Optics Express
Verified
Journal Article
Open access
PDF file
KEKatjana Ehrlich
Katjana Ehrlich
AKA. Kufcsák
A. Kufcsák
SMS. McAughtrie
S. McAughtrie
HFH. Fleming
H. Fleming
NKNikola Krstajić
Nikola Krstajić
MTMichael Tanner
Michael Tanner
Full exploitation of fibre Raman probes has been limited by the obstruction of weak Raman signals by background fluorescence of the sample and the intrinsic Raman signal of the delivery fibre. Here we utilised functionalised gold nanoshells (NS) to take advantage of the surface-enhanced Raman spectroscopy (SERS) effect to enhance the pH responsive spectrum of 4-mercaptobenzoic acid (MBA). However, the fibre background is still dominant. Using the photon arrival time-resolving capability of a CMOS single-photon avalanche diode (SPAD) based line sensor, we recover the SERS spectrum without a fibre background in a 10 s measurement. In this manner, pH sensing through a multimode fibre at a low excitation power that is safe for future in vivo applications, with short acquisition times (10 or 60 s), is demonstrated. A measurement precision of ± 0.07 pH units is thus achieved.

15 October 2020 in European Respiratory Journal
Verified
Journal Article
Open access
SFSusan Fernandes
Susan Fernandes
GWGareth Williams
Gareth Williams
EWElvira Williams
Elvira Williams
KEKatjana Ehrlich
Katjana Ehrlich
JSJames Stone
James Stone
KDKevin Dhaliwal
Kevin Dhaliwal
Solitary pulmonary nodules (SPNs) are a clinical challenge, given there is no single clinical sign or radiological feature that definitively identifies a benign from a malignant SPN. The early detection of lung cancer has a huge impact on survival outcome. Consequently, there is great interest in the prompt diagnosis, and treatment of malignant SPNs. Current diagnostic pathways involve endobronchial/transthoracic tissue biopsies or radiological surveillance, which can be associated with suboptimal diagnostic yield, healthcare costs and patient anxiety. Cutting-edge technologies are needed to disrupt and improve, existing care pathways. Optical fibre-based techniques, which can be deliveredviathe working channel of a bronchoscope orviatransthoracic needle, may deliver advanced diagnostic capabilities in patients with SPNs. Optical endomicroscopy, an autofluorescence-based imaging technique, demonstrates abnormal alveolar structure in SPNsin vivo. Alternative optical fingerprinting approaches, such as time-resolved fluorescence spectroscopy and fluorescence-lifetime imaging microscopy, have shown promise in discriminating lung cancer from surrounding healthy tissue. Whilst fibre-based Raman spectroscopy has enabled real-time characterisation of SPNsin vivo. Fibre-based technologies have the potential to enablein situcharacterisation and real-time microscopic imaging of SPNs, which could aid immediate treatment decisions in patients with SPNs. This review discusses advances in current imaging modalities for evaluating SPNs, including computed tomography (CT) and positron emission tomography-CT. It explores the emergence of optical fibre-based technologies, and discusses their potential role in patients with SPNs and suspected lung cancer.

25 August 2023 in Optics Letters
Verified
Journal Article
Closed access
XZXiangnan Zhou
Xiangnan Zhou
JBJulien Bec
Julien Bec
KEKatjana Ehrlich
Katjana Ehrlich
AAAlba Alfonso-Garcia
Alba Alfonso-Garcia
LMLaura Marcu
Laura Marcu
This Letter presents an experimental study comparing the photon rate and photon economy of pulse sampling fluorescence lifetime imaging (PS-FLIm) with the conventional time-correlated single photon counting (TCSPC) technique. We found that PS-FLIm has a significantly higher photon detection rate (200 MHz) compared with TCSPC (2–8 MHz) but lower photon economy (4–5 versus 1–1.3). The main factor contributing to the lower photon economy in PS-FLIm is laser pulse variability. These results demonstrate that PS-FLIm offers 25× faster imaging speed than TCSPC while maintaining room light rejection in clinical settings. This makes PS-FLIm a robust technique for clinical applications.

5 November 2012 in Monthly Notices of the Royal Astronomical Society
Verified
Journal Article
Open access
PDF file
JOJ.-C. Olaya
J.-C. Olaya
SLSergio Leon-Saval
Sergio Leon-Saval
DSD. Schirdewahn
D. Schirdewahn
KEKatjana Ehrlich
Katjana Ehrlich
DHD. M. Haynes
D. M. Haynes
RHR. Haynes
R. Haynes
In this paper, we study how the spectral information is transmitted through a 1:61 photonic lantern (PL) when illuminating the multimode (MM) end wit

1 June 2020 in APL Photonics
Verified
Journal Article
Open access
PDF file
HCHarikumar K Chandrasekharan
Harikumar K Chandrasekharan
KEKatjana Ehrlich
Katjana Ehrlich
MTMichael Tanner
Michael Tanner
DHDionne M. Haynes
Dionne M. Haynes
SMSebabrata Mukherjee
Sebabrata Mukherjee
RTRobert R. Thomson
Robert R. Thomson
Wavelength-to-time mapping (WTM)—stretching ultrashort optical pulses in a dispersive medium such that the instantaneous frequency becomes time-dependent—is usually performed using a single-mode fiber. In a number of applications, such as time-stretch imaging (TSI), the use of this single-mode fiber during WTM limits the achievable sampling rate and the imaging quality. Multimode fiber based WTM is a potential route to overcome this challenge and project a more diverse range of light patterns. Here, we demonstrate the use of a two-dimensional single-photon avalanche diode (SPAD) array to image, in a time-correlated single-photon counting (TCSPC) manner, the time- and wavelength-dependent arrival of different spatial modes in a few-mode fiber. We then use a TCSPC spectrometer with a one-dimensional SPAD array to record and calibrate the wavelength-dependent and mode-dependent WTM processes. The direct measurement of the WTM of the spatial modes opens a convenient route to estimate group velocity dispersion, differential mode delay, and the effective refractive index of different spatial modes. This is applicable to TSI and ultrafast optical imaging, as well as broader areas such as telecommunications.