Benjamin Bircher

Dr. Benjamin Bircher

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2013 in Analytical Chemistry
Verified
Journal Article
Open access
BBBenjamin Bircher
Benjamin Bircher
LDLuc Duempelmann
Luc Duempelmann
KRKasper Renggli
Kasper Renggli
HLHans Peter Lang
Hans Peter Lang
CGChristoph Gerber
Christoph Gerber
TBThomas Braun
Thomas Braun
A microcantilever based method for fluid viscosity and mass density measurements with high temporal resolution and microliter sample consumption is presented. Nanomechanical cantilever vibration is driven by photothermal excitation and detected by an optical beam deflection system using two laser beams of different wavelengths. The theoretical framework relating cantilever response to the viscosity and mass density of the surrounding fluid was extended to consider higher flexural modes vibrating at high Reynolds numbers. The performance of the developed sensor and extended theory was validated over a viscosity range of 1–20 mPa·s and a corresponding mass density range of 998–1176 kg/m3 using reference fluids. Separating sample plugs from the carrier fluid by a two-phase configuration in combination with a microfluidic flow cell, allowed samples of 5 μL to be sequentially measured under continuous flow, opening the method to fast and reliable screening applications. To demonstrate the study of dynamic processes, the viscosity and mass density changes occurring during the free radical polymerization of acrylamide were monitored and compared to published data. Shear-thinning was observed in the viscosity data at higher flexural modes, which vibrate at elevated frequencies. Rheokinetic models allowed the monomer-to-polymer conversion to be tracked in spite of the shear-thinning behavior, and could be applied to study the kinetics of unknown processes.

1 February 2016 in Sensors and Actuators B: Chemical
Verified
Journal Article
Open access
BBBenjamin Bircher
Benjamin Bircher
RKRoger Krenger
Roger Krenger
TBThomas Braun
Thomas Braun
Most methods used to determine the viscosity and mass density of liquids have two major drawbacks: relatively high sample consumption (∼milliliters) and long measurement time (∼minutes). Resonant nanomechanical cantilevers promise to overcome these limitations. Although sample consumption has already been significantly reduced, the time resolution was rarely addressed to date. We present a method to decrease the time and user interaction required for such measurements. It features (i) a droplet-generating automatic sampler using fluorinated oil to separate microliter sample plugs, (ii) a PDMS-based microfluidic measurement cell containing the resonant microcantilever sensors driven by photothermal excitation, (iii) dual phase-locked loop frequency tracking of a higher-mode resonance to achieve millisecond time resolution, and (iv) signal processing to extract the resonance parameters, namely the eigenfrequency and quality factor. The principle was validated by screening series of 3μL droplets of glycerol solutions separated by fluorinated oil at a rate of ∼6s per sample. An analytical hydrodynamic model (Van Eysden and Sader, 2007 [6]) and a reduced order model (Heinisch et al., 2014 [16]) were employed to calculate the viscosity and mass density of the sample liquids in a viscosity range of 1–10.5mPas and a density range of 998–1154kgm−3

1 September 2013 in Journal of Structural Biology
Verified
Journal Article
Open access
SKSimon Kemmerling
Simon Kemmerling
SAStefan A. Arnold
Stefan A. Arnold
BBBenjamin Bircher
Benjamin Bircher
NSNora Sauter
Nora Sauter
Carlos EscobedoCarlos Escobedo
Carlos Escobedo
TBThomas Braun
Thomas Braun
The stochastic nature of biological systems makes the study of individual cells a necessity in systems biology. Yet, handling and disruption of single cells and the analysis of the relatively low concentrations of their protein components still challenges available techniques. Transmission electron microscopy (TEM) allows for the analysis of proteins at the single-molecule level. Here, we present a system for single-cell lysis under light microscopy observation, followed by rapid uptake of the cell lysate. Eukaryotic cells were grown on conductively coated glass slides and observed by light microscopy. A custom-designed microcapillary electrode was used to target and lyse individual cells with electrical pulses. Nanoliter volumes were subsequently aspirated into the microcapillary and dispensed onto an electron microscopy grid for TEM inspection. We show, that the cell lysis and preparation method conserves protein structures well and is suitable for visual analysis by TEM.

1 November 2013 in Micro & Nano Letters
Verified
Journal Article
Open access
PDF file
BBBenjamin Bircher
Benjamin Bircher
LDLuc Duempelmann
Luc Duempelmann
HLHans Peter Lang
Hans Peter Lang
CGChristoph Gerber
Christoph Gerber
TBThomas Braun
Thomas Braun
Demands to improve the sensitivity and measurement speed of dynamic scanning force microscopy and cantilever sensing applications necessitate the development of smaller cantilever sensors. As a result, methods to directly drive cantilevers, such as photothermal or magnetic excitation, are gaining in importance. Presented is a report on the effect of photothermal excitation of microcantilevers on the increase in steady‐state temperature and the dynamics of higher mode vibrations. First, the local temperature increase upon continuous irradiation with laser light at different positions along the cantilever was measured and compared with finite element analysis data. The temperature increase was highest when the heating laser was positioned at the free end of the cantilever. Next, the laser intensity was modulated to drive higher flexural modes to resonance. The dependence of the cantilever dynamics on the excitation laser position was assessed and was in good agreement with the analytical expressions. An optimal position to simultaneously excite all flexural modes of vibration with negligible heating was found at the clamped end of the cantilever. The reports findings are essential for optimisation of the excitation efficiency to minimise the rise in temperature and avoid damaging delicate samples or functionalisation layers.

20 December 2019 in Measurement Science and Technology
Verified
Journal Article
Open access
PDF file
MLMelina Lüthi
Melina Lüthi
BBBenjamin Bircher
Benjamin Bircher
FMFelix Meli
Felix Meli
AKAlain Kueng
Alain Kueng
RTRudolf Thalmann
Rudolf Thalmann
To improve the accuracy of dimensional x-ray computed tomography (CT), error sources have to be characterised and accounted for. A variety of error sources have been comprehensively described in the literature. However, the influence of geometrical distortion of the flat-panel detector has rarely been considered. In this paper, the deviation from nominal geometry of a flat-panel x-ray detector was characterised using a calibrated ball plate. In-plane deviations were separated from the detector topography by varying the source–detector distance, resulting in a 3D detector geometry. A correction model for arbitrary source–detector distances was developed, which reduced the maximum errors of sphere centre-to-centre distances in scale-corrected CT measurements from ±3.9 µm to below ±0.8 µm. This fivefold improvement emphasises the importance of such correction for dimensional CT.

11 January 2010 in Applied Physics Letters
Verified
Journal Article
Closed access
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RGR. R. Grüter
R. R. Grüter
ZKZahid Hamid Khan
Zahid Hamid Khan
RPR. Paxman
R. Paxman
JNJoseph Ndieyira
Joseph Ndieyira
BDB. Dueck
B. Dueck
BHBart Hoogenboom
Bart Hoogenboom
Micro and nanomechanical resonators are powerful and label-free sensors of analytes in various environments. Their response, however, is a convolution of mass, rigidity, and nanoscale heterogeneity of adsorbates. Here we demonstrate a procedure to disentangle this complex sensor response, to simultaneously measure both mass and elastic properties of nanometer thick samples. This turns an apparent disadvantage of these resonators into a striking and unique asset, enabling them to measure more than mass alone.