John-Paul J.

Dr. John-Paul J.

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 March 2006 in Science
Verified
Journal Article
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BLBo Li
Bo Li
JJJohn-Paul J.
John-Paul J.
JBJoseph S. Brunzelle
Joseph S. Brunzelle
GMGert N. Moll
Gert N. Moll
WDWilfred A. van der Donk
Wilfred A. van der Donk
SNSatish Nair
Satish Nair
Nisin is a posttranslationally modified antimicrobial peptide that is widely used as a food preservative. It contains five cyclic thioethers of varying sizes that are installed by a single enzyme, NisC. Reported here are the in vitro reconstitution of the cyclization process and the x-ray crystal structure of the NisC enzyme. The structure reveals similarities in fold and substrate activation with mammalian farnesyl transferases, suggesting that human homologs of NisC posttranslationally modify a cysteine of a protein substrate.

14 May 2020 in Cerebral Cortex
Verified
Journal Article
Open access
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NVNicholas M Vogt
Nicholas M Vogt
JHJack F Hunt
Jack F Hunt
NANagesh Adluru
Nagesh Adluru
DDDouglas C Dean
Douglas C Dean
SJSterling C Johnson
Sterling C Johnson
BBBarbara B Bendlin
Barbara B Bendlin
In Alzheimer’s disease (AD), neurodegenerative processes are ongoing for years prior to the time that cortical atrophy can be reliably detected using conventional neuroimaging techniques. Recent advances in diffusion-weighted imaging have provided new techniques to study neural microstructure, which may provide additional information regarding neurodegeneration. In this study, we used neurite orientation dispersion and density imaging (NODDI), a multi-compartment diffusion model, in order to investigate cortical microstructure along the clinical continuum of mild cognitive impairment (MCI) and AD dementia. Using gray matter-based spatial statistics (GBSS), we demonstrated that neurite density index (NDI) was significantly lower throughout temporal and parietal cortical regions in MCI, while both NDI and orientation dispersion index (ODI) were lower throughout parietal, temporal, and frontal regions in AD dementia. In follow-up ROI analyses comparing microstructure and cortical thickness (derived from T1-weighted MRI) within the same brain regions, differences in NODDI metrics remained, even after controlling for cortical thickness. Moreover, for participants with MCI, gray matter NDI—but not cortical thickness—was lower in temporal, parietal, and posterior cingulate regions. Taken together, our results highlight the utility of NODDI metrics in detecting cortical microstructural degeneration that occurs prior to measurable macrostructural changes and overt clinical dementia.

1 January 2015 in Academic Radiology
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Journal Article
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ARAndrew B. Rosenkrantz
Andrew B. Rosenkrantz
MMMishal Mendiratta-Lala
Mishal Mendiratta-Lala
BBBrian Bartholmai
Brian Bartholmai
DGDhakshinamoorthy Ganeshan
Dhakshinamoorthy Ganeshan
RARichard G. Abramson
Richard G. Abramson
LLLeon Lenchik
Leon Lenchik

19 February 2019 in Frontiers in Neuroscience
Verified
Journal Article
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SYSue Y. Yi
Sue Y. Yi
BBBrian R. Barnett
Brian R. Barnett
MTMaribel Torres-Velázquez
Maribel Torres-Velázquez
YZYuxin Zhang
Yuxin Zhang
SHSamuel A. Hurley
Samuel A. Hurley
JJJohn-Paul J.
John-Paul J.
Neuroinflammation plays a central role in the neuropathogenesis of a wide-spectrum of neurologic and psychiatric disease, but current neuroimaging methods to detect and characterize neuroinflammation are limited. We explored the sensitivity of quantitative multi-compartment diffusion MRI, and specifically neurite orientation dispersion and density imaging (NODDI), to detect changes in microglial density in the brain. Monte Carlo simulations of water diffusion using a NODDI acquisition scheme were performed to measure changes in a virtual MRI signal following modeled cellular changes within the extra-neurite space. 12-week-old C57BL/6J male mice (n = 48; 24 control, 24 treated with colony stimulating factor 1 receptor (CSF1R) inhibitor, PLX5622) were sacrificed at 0, 1, 3, and 7 days following withdrawal of CSF1R inhibition and were imaged ex-vivo to obtain measures of the orientation dispersion index (ODI). Following imaging, all brains were immunostained with Iba-1, NeuN, and GFAP for quantitative fluorescence microscopy. Cell populations were calculated with the ImageJ particle analyzer tool; correlation between microglial density and mean ODI values were calculated with Kendall's tau. Monte Carlo simulations demonstrate the sensitivity and positive correlation of ODI to increased occupancy in the extra-neurite space. Commensurate with our simulation data, ex-vivo NODDI imaging demonstrates an increase in ODI as microglia repopulate the brain following the withdrawal of CSF1R inhibition. Quantitative immunofluorescence of microglial density reveals that microglial density is positively correlated with ODI and greater hindered diffusion in the extra-neurite space (τ = 0.386, p < 0.05). Our results demonstrate that clinically feasible multi-compartment diffusion weighted imaging techniques such as NODDI are sensitive to microglial density and the cellular changes associated with microglial activation and highlights its potential to improve clinical diagnostic accuracy, patient risk stratification, and therapeutic monitoring of neuroinflammation in neurologic and psychiatric disease.

11 June 2021 in American Journal of Neuroradiology
Verified
Journal Article
Closed access
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AVA.F. Voter
A.F. Voter
MLM.E. Larson
M.E. Larson
JGJohn Garrett
John Garrett
JJJohn-Paul J.
John-Paul J.
BACKGROUND AND PURPOSE: Artificial intelligence decision support systems are a rapidly growing class of tools to help manage ever-increasing imaging volumes. The aim of this study was to evaluate the performance of an artificial intelligence decision support system, Aidoc, for the detection of cervical spinal fractures on noncontrast cervical spine CT scans and to conduct a failure mode analysis to identify areas of poor performance. MATERIALS AND METHODS: This retrospective study included 1904 emergent noncontrast cervical spine CT scans of adult patients (60 [SD, 22] years, 50.3% men). The presence of cervical spinal fracture was determined by Aidoc and an attending neuroradiologist; discrepancies were independently adjudicated. Algorithm performance was assessed by calculation of the diagnostic accuracy, and a failure mode analysis was performed. RESULTS: Aidoc and the neuroradiologist9s interpretation were concordant in 91.5% of cases. Aidoc correctly identified 67 of 122 fractures (54.9%) with 106 false-positive flagged studies. Diagnostic performance was calculated as the following: sensitivity, 54.9% (95% CI, 45.7%–63.9%); specificity, 94.1% (95% CI, 92.9%–95.1%); positive predictive value, 38.7% (95% CI, 33.1%–44.7%); and negative predictive value, 96.8% (95% CI, 96.2%–97.4%). Worsened performance was observed in the detection of chronic fractures; differences in diagnostic performance were not altered by study indication or patient characteristics. CONCLUSIONS: We observed poor diagnostic accuracy of an artificial intelligence decision support system for the detection of cervical spine fractures. Many similar algorithms have also received little or no external validation, and this study raises concerns about their generalizability, utility, and rapid pace of deployment. Further rigorous evaluations are needed to understand the weaknesses of these tools before widespread implementation.

3 April 2021 in Journal of the American College of Radiology
Verified
Journal Article
Closed access
AVAndrew F. Voter
Andrew F. Voter
EMEce Meram
Ece Meram
JGJohn W. Garrett
John W. Garrett
JJJohn-Paul J.
John-Paul J.