Muhammad Ali

Dr. Muhammad Ali

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
28 November 2019 in Environmental Science and Pollution Research
Verified
Journal Article
Closed access
PDF file
LYLiu Yizhu
Liu Yizhu
MIMuhammad Imtiaz
Muhammad Imtiaz
Allah DittaAllah Ditta
Allah Ditta
MRMuhammad Shahid Rizwan
Muhammad Shahid Rizwan
MAMuhammad Ashraf
Muhammad Ashraf
STShuxin Tu
Shuxin Tu

1 August 2018 in Ecotoxicology and Environmental Safety
Verified
Journal Article
Closed access
MIMuhammad Imtiaz
Muhammad Imtiaz
MAMuhammad Ashraf
Muhammad Ashraf
MRMuhammad Shahid Rizwan
Muhammad Shahid Rizwan
Muhammad Amjad NawazMuhammad Amjad Nawaz
Muhammad Amjad Nawaz
MRMuhammad Rizwan
Muhammad Rizwan
STShuxin Tu
Shuxin Tu

24 April 2017 in Frontiers in Microbiology
Verified
Journal Article
Open access
PDF file
MAMaria K. Ali
Maria K. Ali
XLXinfeng Li
Xinfeng Li
QTQing Tang
Qing Tang
XLXiaoyu Liu
Xiaoyu Liu
FCFang Chen
Fang Chen
JHJin He
Jin He
Kdp-ATPase is an inducible high affinity potassium uptake system that is widely distributed in bacteria, and is generally regulated by the KdpD/KdpE two-component system (TCS). In this study, conducted on Mycobacterium smegmatis, the kdpFABC (encoding Kdp-ATPase) expression was found to be affected by low concentration of K+, high concentrations of Na+, and/or NH4+ of the medium. The KdpE was found to be a transcriptional regulator that bound to a specific 22-bp sequence in the promoter region of kdpFABC operon to positively regulate kdpFABC expression. The KdpE binding motif was highly conserved in the promoters of kdpFABC among the mycobacterial species. 5′-RACE data indicated a transcriptional start site (TSS) of the kdpFABC operon within the coding sequence of MSMEG_5391, which comprised a 120-bp long 5′-UTR and an open reading frame of the 87-bp kdpF gene. The kdpE deletion resulted in altered growth rate under normal and low K+ conditions. Furthermore, under K+ limiting conditions, a single transcript (kdpFABCDE) spanning kdpFABC and kdpDE operons was observed. This study provided the first insight into the regulation of kdpFABC operon by the KdpD/KdpE TCS in M. smegmatis.

1 February 2017 in Environmental and Experimental Botany
Verified
Journal Article
Closed access
MIMuhammad Imtiaz
Muhammad Imtiaz
MRMuhammad Shahid Rizwan
Muhammad Shahid Rizwan
MMMuhammad Adnan Mushtaq
Muhammad Adnan Mushtaq
Balal YousafBalal Yousaf
Balal Yousaf
MAMuhammad Ashraf
Muhammad Ashraf
STShuxin Tu
Shuxin Tu

12 September 2013 in PLOS ONE
Verified
Journal Article
Open access
PDF file
WYWeihong Yang
Weihong Yang
ZZZhen Zhang
Zhen Zhang
ZZZhongming Zhang
Zhongming Zhang
HCHong Chen
Hong Chen
JLJin Liu
Jin Liu
LLLin Li
Lin Li
Manganese-oxidizing bacteria in the aquatic environment have been comprehensively investigated. However, little information is available about the distribution and biogeochemical significance of these bacteria in terrestrial soil environments. In this study, stratified soils were initially examined to investigate the community structure and diversity of manganese-oxidizing bacteria. Total 344 culturable bacterial isolates from all substrata exhibited Mn(II)-oxidizing activities at the range of 1 µM to 240 µM of the equivalent MnO2. The high Mn(II)-oxidizing isolates (>50 mM MnO2) were identified as the species of phyla Actinobacteria, Firmicutes and Proteobacteria. Seven novel Mn(II)-oxidizing bacterial genera (species), namely, Escherichia, Agromyces, Cellulomonas, Cupriavidus, Microbacterium, Ralstonia, and Variovorax, were revealed via comparative phylogenetic analysis. Moreover, an increase in the diversity of soil bacterial community was observed after the combined enrichment of Mn(II) and carbon-rich complex. The phylogenetic classification of the enriched bacteria represented by predominant denaturing gradient gel electrophoresis bands, was apparently similar to culturable Mn(II)-oxidizing bacteria. The experiments were further undertaken to investigate the properties of the Mn oxide aggregates formed by the bacterial isolates with high Mn(II)-oxidizing activity. Results showed that these bacteria were closely encrusted with their Mn oxides and formed regular microspherical aggregates under prolonged Mn(II) and carbon-rich medium enrichment for three weeks. The biotic oxidation of Mn(II) to Mn(III/IV) by these isolates was confirmed by kinetic examinations. X-ray diffraction assays showed the characteristic peaks of several Mn oxides and rhodochrosite from these aggregates. Leucoberbelin blue tests also verified the Mn(II)-oxidizing activity of these aggregates. These results demonstrated that Mn oxides were formed at certain amounts under the enrichment conditions, along with the formation of rhodochrosite in such aggregates. Therefore, this study provides insights into the structure and diversity of soil-borne bacterial communities in Mn(II)-oxidizing habitats and supports the contribution of soil-borne Mn(II)-oxidizing bacteria to Mn oxide mineralization in soils.

3 June 2015 in Scientific Reports
Verified
Journal Article
Open access
PDF file
ZZZhen Zhang
Zhen Zhang
ZZZhongming Zhang
Zhongming Zhang
HCHong Chen
Hong Chen
JLJin Liu
Jin Liu
CLChang Liu
Chang Liu
LLLin Li
Lin Li
In this manuscript, we report that a bacterial multicopper oxidase (MCO266) catalyzes Mn(II) oxidation on the cell surface, resulting in the surface deposition of Mn(III) and Mn(IV) oxides and the gradual formation of bulky oxide aggregates. These aggregates serve as nucleation centers for the formation of Mn oxide micronodules and Mn-rich sediments. A soil-borne Escherichia coli with high Mn(II)-oxidizing activity formed Mn(III)/Mn(IV) oxide deposit layers and aggregates under laboratory culture conditions. We engineered MCO266 onto the cell surfaces of both an activity-negative recipient and wild-type strains. The results confirmed that MCO266 governs Mn(II) oxidation and initiates the formation of deposits and aggregates. By contrast, a cell-free substrate, heat-killed strains and intracellularly expressed or purified MCO266 failed to catalyze Mn(II) oxidation. However, purified MCO266 exhibited Mn(II)-oxidizing activity when combined with cell outer membrane component (COMC) fractions in vitro. We demonstrated that Mn(II) oxidation and aggregate formation occurred through an oxygen-dependent biotic transformation process that requires a certain minimum Mn(II) concentration. We propose an approximate electron transfer pathway in which MCO266 transfers only one electron to convert Mn(II) to Mn(III) and then cooperates with other COMC electron transporters to transfer the other electron required to oxidize Mn(III) to Mn(IV).