Yumei Zhang

Prof. Yumei Zhang

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 April 2017 in BMC Genomics
Verified
Journal Article
Open access
PDF file
YZYumei Zhang
Yumei Zhang
GWGuangyuan Wang
Guangyuan Wang
LSLimin Song
Limin Song
XHXiaoyan He
Xiaoyan He
SWShu Wang
Shu Wang
QLQi Lin
Qi Lin
Protein lysine succinylation is an important post-translational modification and plays a critical regulatory role in almost every aspects of cell metabolism in both eukaryotes and prokaryotes. Common wheat is one of the major global cereal crops. However, to date, little is known about the functions of lysine succinylation in this plant. Here, we performed a global analysis of lysine succinylation in wheat and examined its overlap with lysine acetylation. In total, 330 lysine succinylated modification sites were identified in 173 proteins. Bioinformatics analysis showed that the modified proteins are distributed in multiple subcellular compartments and are involved in a wide variety of biological processes such as photosynthesis and the Calvin-Benson cycle, suggesting an important role for lysine succinylation in these processes. Five putative succinylation motifs were identified. A protein interaction network analysis revealed that diverse interactions are modulated by protein succinylation. Moreover, 21 succinyl-lysine sites were found to be acetylated at the same position, and 33 proteins were modified by both acetylation and succinylation, suggesting an extensive overlap between succinylation and acetylation in common wheat. Comparative analysis indicated that lysine succinylation is conserved between common wheat and Brachypodium distachyon. These results suggest that lysine succinylation is involved in diverse biological processes, especially in photosynthesis and carbon fixation. This systematic analysis represents the first global analysis of lysine succinylation in common wheat and provides an important resource for exploring the physiological role of lysine succinylation in this cereal crop and likely in all plants.

29 May 2020 in Food and Bioprocess Technology
Verified
Journal Article
Closed access
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MDMing Dong
Ming Dong
HCHongqiang Chen
Hongqiang Chen
YZYumei Zhang
Yumei Zhang
YXYujuan Xu
Yujuan Xu
MHMinyi Han
Minyi Han
GZGuanghong Zhou
Guanghong Zhou

18 June 2023 in Plants
Verified
Journal Article
Open access
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JLJiawei Li
Jiawei Li
QZQinglin Zhu
Qinglin Zhu
FJfuchao Jiao
fuchao Jiao
ZYZhenwei Yan
Zhenwei Yan
HZHaiyan Zhang
Haiyan Zhang
MWMing Wang
Ming Wang
Maize is the most important cereal crop globally. However, in recent years, maize production faced numerous challenges from environmental factors due to the changing climate. Salt stress is among the major environmental factors that negatively impact crop productivity worldwide. To cope with salt stress, plants developed various strategies, such as producing osmolytes, increasing antioxidant enzyme activity, maintaining reactive oxygen species homeostasis, and regulating ion transport. This review provides an overview of the intricate relationships between salt stress and several plant defense mechanisms, including osmolytes, antioxidant enzymes, reactive oxygen species, plant hormones, and ions (Na+, K+, Cl−), which are critical for salt tolerance in maize. It addresses the regulatory strategies and key factors involved in salt tolerance, aiming to foster a comprehensive understanding of the salt tolerance regulatory networks in maize. These new insights will also pave the way for further investigations into the significance of these regulations in elucidating how maize coordinates its defense system to resist salt stress.

13 May 2020 in Plant Growth Regulation
Verified
Journal Article
Closed access
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WGWeiwei Guo
Weiwei Guo
KYKuohai Yu
Kuohai Yu
LHLiping Han
Liping Han
XLXimei Li
Ximei Li
HWHuifang Wang
Huifang Wang
YZYumei Zhang
Yumei Zhang

10 August 2020 in Scientific Reports
Verified
Journal Article
Open access
PDF file
WGWeiwei Guo
Weiwei Guo
LHLiping Han
Liping Han
XLXimei Li
Ximei Li
HWHuifang Wang
Huifang Wang
PMPing Mu
Ping Mu
YZYumei Zhang
Yumei Zhang
Seed germination is the first stage in wheat growth and development, directly affecting grain yield and quality. As an important post-translation modification, lysine acetylation participates in diverse biological functions. However, little is known regarding the quantitative acetylproteome characterization during wheat seed germination. In this study, we generated the first comparative proteomes and lysine acetylomes during wheat seed germination. In total, 5,639 proteins and 1,301 acetylated sites on 722 proteins were identified at 0, 12 and 24 h after imbibitions. Several particularly preferred amino acids were found near acetylation sites, including KacS, KacT, KacK, KacR, KacH, KacF, KacN, Kac*E, FKac and Kac*D, in the embryos during seed germination. Among them, KacH, KacF, FKac and KacK were conserved in wheat. Biosynthetic process, transcriptional regulation, ribosome and proteasome pathway related proteins were significantly enriched in both differentially expressed proteins and differentially acetylated proteins through Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis. We also revealed that histone acetylation was differentially involved in epigenetic regulation during seed germination. Meanwhile, abscisic acid and stress related proteins were found with acetylation changes. In addition, we focused on 8 enzymes involved in carbohydrate metabolism, and found they were differentially acetylated during seed germination. Finally, a putative metabolic pathway was proposed to dissect the roles of protein acetylation during wheat seed germination. These results not only demonstrate that lysine acetylation may play key roles in seed germination of wheat but also reveal insights into the molecular mechanism of seed germination in this crop.

28 July 2025 in The Plant Journal
Verified
Journal Article
Open access
YZYan Zhou
Yan Zhou
GCGuangxian Cui
Guangxian Cui
SWShijun Wei
Shijun Wei
XXXingyuan Xi
Xingyuan Xi
JZJiaqi Zhang
Jiaqi Zhang
MXMingming Xin
Mingming Xin
SUMMARY: Grain weight is one of the critical determinants of wheat (Triticum aestivum L.) yield, and understanding its genetic and molecular mechanisms is essential for improving crop productivity. Here, we find that TaSG‐D1, which encodes an STKc‐GSK3 kinase, negatively regulates grain weight. TaSG‐D1 interacts with and phosphorylates TaGAMyb to reduce its degradation. Overexpression of TaGAMyb results in decreased grain length and weight, whereas its knockout increases both agronomic traits in wheat. Further investigation reveals that TaGAMyb directly activates the expression of TaCKX2.2.1, a negative regulator of grain development. Transcriptome profiling shows differential expression of TaCKX2.2.1 in 15‐DAP grain of WT and TaGAMyb knockout lines, ultimately leading to a decreased concentration of active cytokinin in grains. Taken together, our findings demonstrate that TaSG‐D1 negatively regulates grain development by increasing the protein abundance of transcription factor TaGAMyb, which in turn promotes the expression of downstream gene TaCKX2.2.1, a key regulator of cytokinin signaling.