Lee Baumgartner

Dr. Lee Baumgartner

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Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 November 2017 in Fish and Fisheries
Verified
Journal Article
Open access
PDF file
Ana T. SilvaAna T. Silva
Ana T. Silva
MLMartyn C. Lucas
Martyn C. Lucas
TCTheodore Castro-Santos
Theodore Castro-Santos
CKChristos Katopodis
Christos Katopodis
LBLee Baumgartner
Lee Baumgartner
SCSteven J. Cooke
Steven J. Cooke
Much effort has been devoted to developing, constructing and refining fish passage facilities to enable target species to pass barriers on fluvial systems, and yet, fishway science, engineering and practice remain imperfect. In this review, 17 experts from different fish passage research fields (i.e., biology, ecology, physiology, ecohydraulics, engineering) and from different continents (i.e., North and South America, Europe, Africa, Australia) identified knowledge gaps and provided a roadmap for research priorities and technical developments. Once dominated by an engineering‐focused approach, fishway science today involves a wide range of disciplines from fish behaviour to socioeconomics to complex modelling of passage prioritization options in river networks. River barrier impacts on fish migration and dispersal are currently better understood than historically, but basic ecological knowledge underpinning the need for effective fish passage in many regions of the world, including in biodiversity hotspots (e.g., equatorial Africa, South‐East Asia), remains largely unknown. Designing efficient fishways, with minimal passage delay and post‐passage impacts, requires adaptive management and continued innovation. While the use of fishways in river restoration demands a transition towards fish passage at the community scale, advances in selective fishways are also needed to manage invasive fish colonization. Because of the erroneous view in some literature and communities of practice that fish passage is largely a proven technology, improved international collaboration, information sharing, method standardization and multidisciplinary training are needed. Further development of regional expertise is needed in South America, Asia and Africa where hydropower dams are currently being planned and constructed.

7 August 2022 in Reviews in Fish Biology and Fisheries
Verified
Journal Article
Open access
PDF file
PRPatrick Reis-Santos
Patrick Reis-Santos
BGBronwyn M. Gillanders
Bronwyn M. Gillanders
ASAnna M. Sturrock
Anna M. Sturrock
CIChristopher Izzo
Christopher Izzo
DODion S. Oxman
Dion S. Oxman
BWBenjamin D. Walther
Benjamin D. Walther
Chemical analysis of calcified structures continues to flourish, as analytical and technological advances enable researchers to tap into trace elements and isotopes taken up in otoliths and other archival tissues at ever greater resolution. Increasingly, these tracers are applied to refine age estimation and interpretation, and to chronicle responses to environmental stressors, linking these to ecological, physiological, and life-history processes. Here, we review emerging approaches and innovative research directions in otolith chemistry, as well as in the chemistry of other archival tissues, outlining their value for fisheries and ecosystem-based management, turning the spotlight on areas where such biomarkers can support decision making. We summarise recent milestones and the challenges that lie ahead to using otoliths and archival tissues as biomarkers, grouped into seven, rapidly expanding and application-oriented research areas that apply chemical analysis in a variety of contexts, namely: (1) supporting fish age estimation; (2) evaluating environmental stress, ecophysiology and individual performance; (3) confirming seafood provenance; (4) resolving connectivity and movement pathways; (5) characterising food webs and trophic interactions; (6) reconstructing reproductive life histories; and (7) tracing stock enhancement efforts. Emerging research directions that apply hard part chemistry to combat seafood fraud, quantify past food webs, as well as to reconcile growth, movement, thermal, metabolic, stress and reproductive life-histories provide opportunities to examine how harvesting and global change impact fish health and fisheries productivity. Ultimately, improved appreciation of the many practical benefits of archival tissue chemistry to fisheries and ecosystem-based management will support their increased implementation into routine monitoring.Graphical abstract

1 March 2014 in Fisheries
Verified
Journal Article
Closed access
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RBRichard S. Brown
Richard S. Brown
ACAlison H. Colotelo
Alison H. Colotelo
BPBrett D. Pflugrath
Brett D. Pflugrath
CBCraig A Boys
Craig A Boys
LBLee Baumgartner
Lee Baumgartner
DSDouangkham Singhanouvong
Douangkham Singhanouvong
Freshwater fishes are one of the most imperiled groups of vertebrates, and population declines are alarming in terms of biodiversity and to communities that rely on fisheries for their livelihood and nutrition. One activity associated with declines in freshwater fish populations is water resource development, including dams, weirs, and hydropower facilities. Fish passing through irrigation and hydro infrastructures during downstream migration experience a rapid decrease in pressure, which can lead to injuries (barotrauma) that contribute to mortality. There is renewed initiative to expand hydropower and irrigation infrastructure to improve water security and increase low-carbon energy generation. The impact of barotrauma on fish must be understood and mitigated to ensure that development is sustainable for fisheries. This will involve taking steps to expand the knowledge of barotrauma-related injury from its current focus, mainly on seaward-migrating juvenile salmonids of the Pacific Northwest, to incorporate a greater diversity of fish species and life stages from many parts of the world. This article summarizes research that has examined barotrauma during fish passage and articulates a research framework to promote a standardized, global approach. The suggested approach provides clearly defined links to adaptive development of fish friendly technologies, aimed at mitigating the threats faced by global freshwater fisheries from the rapid expansion of water infrastructure. RESUMEN los peces de agua dulce constituyen uno de los grupos más amenazados entre los vertebrados y las disminuciones poblacionales se consideran como alarmantes en términos de biodiversidad y suceden en perjuicio de las comunidades humanas cuyo bienestar y nutrición dependen de las pesquerías basadas en estos recursos. Una actividad que se asocia a la declinación de las poblaciones de peces de agua dulce es la construcción de infraestructura para el desarrollo de recursos hídricos, como presas, weirs e instalaciones hidroenergéticas. Los peces que transitan a través de la infraestructura hídráulica y de irrigación durante su migración hacia el mar, experimentan disminuciones de presión que producen lesiones (barotrauma), las cuales pueden contribuir a la mortalidad. Existe una nueva iniciativa para expandir la infraestructura para la hidroenergía e irrigación y aumentar así la seguridad de agua y la generación de energía de bajo costo en términos de producción de carbono. El efecto del barotrauma en los peces debe ser estudiado y mitigado para asegurar que el progreso sea sustentable para las pesquerías. Esto implicará expandir el conocimiento acerca de las lesiones relacionadas al barotrauma con respecto a como se encuentra ahora; sobre todo el conocimiento de la migración hacia el mar que realizan los juveniles de especies de salmón en el Pacífico noroeste, con el fin de incorporar una mayor diversidad de estadios de vida y especies de diferentes partes del mundo. En este artículo se resume la investigación concerniente al barotrauma en los peces durante su tránsito por hidro-estructuras y se plantea un marco investigativo para promover un enfoque estándarizado y global. El enfoque que se ofrece provee relaciones precisas para el desarrollo adaptativo de tecnologías amigables para los peces, diseñadas con la finalidad de mitigar las amenazas que enfrentan las pesquerías de agua dulce ante la rápida expansión de la infraestructura hídrica.

19 August 2019 in Frontiers in Ecology and Evolution
Verified
Journal Article
Open access
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RLRobert J. Lennox
Robert J. Lennox
CPCraig P. Paukert
Craig P. Paukert
KAKim Aarestrup
Kim Aarestrup
MAMarie Auger-Méthé
Marie Auger-Méthé
LBLee Baumgartner
Lee Baumgartner
SCSteven J. Cooke
Steven J. Cooke
Migration is a widespread but highly diverse component of many animal life histories. Fish migrate throughout the world's oceans, within lakes and rivers, and between the two realms, transporting matter, energy, and other species (e.g., microbes) across boundaries. Migration is therefore a process responsible for myriad ecosystem services. Many human populations depend on the presence of predictable migrations of fish for their subsistence and livelihoods. Although much research has focused on fish migration, many questions remain in our rapidly changing world. We assembled a diverse team of fundamental and applied scientists who study fish migrations in marine and freshwater environments to identify pressing unanswered questions. Our exercise revealed questions within themes related to understanding the migrating individual's internal state, navigational mechanisms, locomotor capabilities, external drivers of migration, the threats confronting migratory fish including climate change, and the role of migration. In addition, we identified key requirements for aquatic animal management, restoration, policy, and governance. Lessons revealed included the difficulties in generalizing among species and populations, and in understanding the levels of connectivity facilitated by migrating fishes. We conclude by identifying priority research needed for assuring a sustainable future for migratory fishes.

23 May 2017 in Nature Ecology & Evolution
Verified
Journal Article
Closed access
PDF file
DNDale G. Nimmo
Dale G. Nimmo
PHPaul Humphries
Paul Humphries
LBLee Baumgartner
Lee Baumgartner
MBMichael Bode
Michael Bode
NBNick R. Bond
Nick R. Bond
Julian OldenJulian Olden
Julian Olden

18 February 2013 in Fish and Fisheries
Verified
Journal Article
Closed access
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LBLee Baumgartner
Lee Baumgartner
JCJohn Conallin
John Conallin
IWIan Wooden
Ian Wooden
BCBruce Campbell
Bruce Campbell
RGRebecca Gee
Rebecca Gee
MMMartin Mallen‐Cooper
Martin Mallen‐Cooper