Richard Jeff Buhr

Dr. Richard Jeff Buhr

orcid

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
27 November 2014 in BMC Veterinary Research
Verified
Journal Article
Open access
PDF file
BOBrian B Oakley
Brian B Oakley
RBRichard Jeff Buhr
Richard Jeff Buhr
CRCasey W Ritz
Casey W Ritz
BKBrian H Kiepper
Brian H Kiepper
MBMark E Berrang
Mark E Berrang
NCNelson A Cox
Nelson A Cox
Poultry remains a major source of foodborne bacterial infections. A variety of additives with presumed anti-microbial and/or growth-promoting effects are commonly added to poultry feed during commercial grow-out, yet the effects of these additives on the gastrointestinal microbial community (the GI microbiome) as the bird matures remain largely unknown. Here we compared temporal changes in the cecal microbiome to the effects of formic acid, propionic acid, and medium-chain fatty acids (MCFA) added to feed and/or drinking water. Cecal bacterial communities at day of hatch (n = 5 birds), 7d (n = 32), 21d (n = 27), and 42d (n = 36) post-hatch were surveyed using direct 454 sequencing of 16S rRNA gene amplicons from each bird in combination with cultivation-based recovery of a Salmonella Typhimurium marker strain and quantitative-PCR targeting Clostridium perfringens. Treatment effects on specific pathogens were generally non-significant. S. Typhimurium introduced by oral gavage at day of hatch was recovered by cultivation from nearly all birds sampled across treatments at 7d and 21d, but by 42d, S. Typhimurium was only recovered from ca. 25% of birds, regardless of treatment. Sequencing data also revealed non-significant treatment effects on genera containing known pathogens and on the cecal microbiome as a whole. In contrast, temporal changes in the cecal microbiome were dramatic, highly significant, and consistent across treatments. At 7d, the cecal community was dominated by three genera (Flavonifractor, Pseudoflavonifractor, and a Lachnospiracea sequence type) that accounted for more than half of sequences. By 21d post-hatch, a single genus (Faecalibacterium) accounted for 23-55% of sequences, and the number of Clostridium 16S rRNA gene copies detected by quantitative-PCR reached a maximum. Over the 42 d experiment, the cecal bacterial community changed significantly as measured by a variety of ecological metrics and increases in the complexity of co-occurrence networks. Management of poultry to improve animal health, nutrition, or food safety may need to consider the interactive effects of any treatments with the dramatic temporal shifts in the taxonomic composition of the cecal microbiome as described here.

1 July 2011 in Poultry Science
Verified
Journal Article
Open access
PDF file
JHJ. F. Hannah
J. F. Hannah
JWJ. L. Wilson
J. L. Wilson
NCN. A. Cox
N. A. Cox
JCJ. A. Cason
J. A. Cason
DBDianna Bourassa
Dianna Bourassa
RBRichard Jeff Buhr
Richard Jeff Buhr
These studies evaluated the bacterial level of unwashed and washed shell eggs from caged and cage-free laying hens. Hy-Line W-36 White and Hy-Line Br

1 February 2019 in Animals
Verified
Journal Article
Open access
PDF file
LJLeonie Jacobs
Leonie Jacobs
DBDianna Bourassa
Dianna Bourassa
CHCaitlin E. Harris
Caitlin E. Harris
RBRichard Jeff Buhr
Richard Jeff Buhr
The aim was to assess the onset of brain stem death for two euthanasia methods—manual cervical dislocation (CD) versus the Koechner Euthanizing Device (KED). Over three days broilers of 36 (n = 60), 42 (n = 80), or 43 days old (n = 60) were euthanized. On days 2 and 3, a treatment was added in which the bird’s head was extended at a ~90° angle after application of the KED (KED+). On those days, gap size was recorded between the skull and atlas vertebra by 1-cm increments. The onset of brain death was assessed by recording the nictitating membrane reflex, gasping reflex and musculoskeletal movements (sec). Additionally, skin damage and blood loss were recorded (y/n). On all days, CD resulted in quicker loss of reflexes and movements compared to KED or KED+. Reflexes returned in 0–15% of CD birds, 50–55% of KED birds, and 40–60% of KED+ birds, possibly regaining consciousness. Skin damage occurred in 0% of CD birds, 68–95% of KED birds, and 85–95% of KED+ birds. On day 2 (p = 0.065) and 3 (p = 0.008), KED birds had or tended to have a narrower skull-to-atlas gap compared to CD and KED+ birds. Based on our results, CD would be the recommended method for broilers.

1 June 2014 in Poultry Science
Verified
Journal Article
Open access
PDF file
RBRichard Jeff Buhr
Richard Jeff Buhr
JWJ. M. Walker
J. M. Walker
DBDianna Bourassa
Dianna Bourassa
ACA. B. Caudill
A. B. Caudill
BKB. H. Kiepper
B. H. Kiepper
HZH. Zhuang
H. Zhuang
The effect of scalding and chilling procedures was evaluated on carcass and breast meat weight and yield in broilers. On 4 separate weeks (trials), b

1 March 2016 in Poultry Science
Verified
Journal Article
Open access
PDF file
KWK. M. Wilson
K. M. Wilson
DBDianna Bourassa
Dianna Bourassa
ADA. J. Davis
A. J. Davis
MFM. E. Freeman
M. E. Freeman
RBRichard Jeff Buhr
Richard Jeff Buhr
Two experiments evaluated prebiotics added to feed on the recovery of Salmonella in broilers during grow-out and processing. In Experiment 1, “seeder” chicks were inoculated with Salmonella Typhimurium and placed with penmates. Treatments were: basal control diet, added 0.3% bamboo charcoal, 0.6% bamboo charcoal, or 0.12% Aromabiotic (medium chain fatty acids). The ceca from seeders and penmates were sampled to confirm Salmonella colonization at 3, 4, and 6 wk, and pen litter was sampled weekly. At 3 wk, charcoal fed chicks had significantly lower cecal recovery (37% lower) of Salmonella via direct plating but no differences at wk 4 or 6. At 6 wk, broilers fed Aromabiotic had no recovery of Salmonella from ceca with direct plating and significantly, 18%, lower recovery with enrichment. In Experiment 2, the treatments were: basal control diet, added 0.3% bamboo charcoal, 0.3% activated bamboo charcoal, or 0.3% pine charcoal. At placement, 2 seeders were challenged with Salmonella and commingled with penmates and ceca sampled at 1 and 2 wk, and ceca from 5 penmates/pen at 3 to 6 wk. Weekly, the pH of the crop and duodenum was measured from 1 penmate/pen and the litter surface sampled. At the end of grow-out broilers were processed. Results showed that penmates had colonized at 1 and 2 wk. Cecal Salmonella showed no differences except at 4 wk, when activated bamboo charcoal had a 18% lower recovery of Salmonella (enrichment) compared to the control (88%). Similar to Experiment 1, the recovery of Salmonella from the litter was not significantly different among treatments, however an overall decrease in recovery by 4 wk with direct plating reoccurred. The pH of the duodenum and the crop were not different among treatments. Crop pH (6.0) for all treatments were significantly higher at wk 1 compared to wk 2 to 6. Charcoals had minimal effect on Salmonella recovery in the ceca, but following defeathering, broilers fed charcoals had significantly lower Salmonella recovery from breast skin (charcoals 5+/60 compared to control 8+/20). While the addition of charcoals to broilers feed did not significantly affect Salmonella recovery during production (from litter or ceca samples) there was a lower Salmonella recovery from breast skin following scalding and defeathering.

1 November 2014 in Poultry Science
Verified
Journal Article
Open access
PDF file
LBL. N. Bartenfeld
L. N. Bartenfeld
DFD. L. Fletcher
D. L. Fletcher
JNJulie K Northcutt
Julie K Northcutt
DBDianna Bourassa
Dianna Bourassa
NCN. A. Cox
N. A. Cox
RBRichard Jeff Buhr
Richard Jeff Buhr
A study was conducted to determine the bacteriological effect of exposing processed broiler carcasses to a high (10-fold increase) concentration chlo