We present a system for data-driven therapy decision support based on techniques from the field of recommender systems. Two methods for therapy recommendation, namely,Collaborative RecommenderandDemographic-based Recommender, are proposed. Both algorithms aim to predict the individual response to different therapy options using diverse patient data and recommend the therapy which is assumed to provide the best outcome for a specific patient and time, that is, consultation. The proposed methods are evaluated using a clinical database incorporating patients suffering from the autoimmune skin disease psoriasis. TheCollaborative Recommenderproves to generate both better outcome predictions and recommendation quality. However, due to sparsity in the data, this approach cannot provide recommendations for the entire database. In contrast, theDemographic-based Recommenderperforms worse on average but covers more consultations. Consequently, both methods profit from a combination into an overall recommender system.
Nearly all functional magnetic resonance imaging (fMRI) studies are conducted in the supine body posture, which has been discussed as a potential confounder of such examinations. The literature suggests that cognitive functions, such as problem solving or perception, differ between supine and upright postures. However, the effect of posture on many cognitive functions is still unknown. Therefore, the aim of the present study was to investigate the effects of body posture (supine vs. sitting) on one of the most frequently used paradigms in the cognitive sciences: the N-back working memory paradigm. Twenty-two subjects were investigated in a randomized within-subject design. Subjects performed the N-back task on two consecutive days in either the supine or the upright posture. Subjective sleep quality and chronic stress were recorded as covariates. Furthermore, changes in mood dimensions and heart rate variability (HRV) were assessed during the experiment. Results indicate that the quality of sleep strongly affects reaction times when subjects performed a working memory task in a supine posture. These effects, however, could not be observed in the sitting position. The findings can be explained by HRV parameters that indicated differences in autonomic regulation in the upright vs. the supine posture. The finding is of particular relevance for fMRI group comparisons when group differences in sleep quality cannot be ruled out.
Camera-based photoplethysmography (cbPPG) is a measurement technique which enables remote vital sign monitoring by using cameras. To obtain valid plethysmograms, proper regions of interest (ROIs) have to be selected in the video data. Most automated selection methods rely on specific spatial or temporal features limiting a broader application. In this work, we present a new method which overcomes those drawbacks and, therefore, allows cbPPG to be applied in an intraoperative environment. We recorded 41 patients during surgery using an RGB and a near-infrared (NIR) camera. A Bayesian skin classifier was employed to detect suitable regions, and a level set segmentation approach to define and track ROIs based on spatial homogeneity. The results show stable and homogeneously illuminated ROIs. We further evaluated their quality with regards to extracted cbPPG signals. The green channel provided the best results where heart rates could be correctly estimated in 95.6% of cases. The NIR channel yielded the highest contribution in compensating false estimations. The proposed method proved that cbPPG is applicable in intraoperative environments. It can be easily transferred to other settings regardless of which body site is considered.
Blood pressure (BP) is among the most important vital signals. Estimation of absolute BP solely using photoplethysmography (PPG) has gained immense attention over the last years. Available works differ in terms of used features as well as classifiers and bear large differences in their results. This work aims to provide a machine learning method for absolute BP estimation, its interpretation using computational methods and its critical appraisal in face of the current literature. We used data from three different sources including 273 subjects and 259,986 single beats. We extracted multiple features from PPG signals and its derivatives. BP was estimated by xgboost regression. For interpretation we used Shapley additive values (SHAP). Absolute systolic BP estimation using a strict separation of subjects yielded a mean absolute error of and correlation of . The results markedly improve if data separation is changed (MAE: , r: ). Interpretation by means of SHAP revealed four features from PPG, its derivation and its decomposition to be most relevant. The presented approach depicts a general way to interpret multivariate prediction algorithms and reveals certain features to be valuable for absolute BP estimation. Our work underlines the considerable impact of data selection and of training/testing separation, which must be considered in detail when algorithms are to be compared. In order to make our work traceable, we have made all methods available to the public.
26 January 2021 in IEEE Journal of Biomedical and Health Informatics
This paper presents an approach for pulse rate extraction from videos. The core of the presented approach is a novel method to segment and track a suitable region of interest (ROI). The proposed method combines level sets with subject-individual Gaussian Mixture Models to yield a time varying ROI. The ROI builds up from multiple homogeneous skin areas under constraints regarding the area and contour length of the ROI. Together with state of the art signal processing methods our approach yields an Mean Average Error (MAE) of 2.3 bpm, 1.4 bpm and 2.7 bpm on own data, the PURE database and the UBFC-rPPG database, respectively. Therewith, our method performs equal or better compared to widely used approaches (e.g. the KLT tracker instead of the proposed image processing yields an MAE of 2.6 bpm, 2.6 bpm and 4.4 bpm). Such results and the 2nd place with a MAE of 7.92 bpm in the 1st Challenge on Remote Physiological Signal Sensing prove the applicability of the proposed method. The taken approach, however, bears further potential for optimization in the context of photoplethysmography imaging and should be transferable to other segmentation tasks as well.
1 September 2016 in Current Directions in Biomedical Engineering
Camera-based photoplethysmography (cbPPG) is a novel technique that allows the contactless acquisition of cardio-respiratory signals. Previous works on cbPPG most often focused on heart rate extraction. This contribution is directed at the assessment of vasomotor activity by means of cameras. In an experimental study, we show that vasodilation and vasoconstriction both lead to significant changes in cbPPG signals. Our findings underline the potential of cbPPG to monitor vasomotor functions in real-life applications.