Jaroslav Červenka

Dr. Jaroslav Červenka


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 February 2020 in Remote Sensing
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Journal Article
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Peter KrzystekPeter Krzystek
Peter Krzystek
ASAlla Serebryanyk
Alla Serebryanyk
CSClaudius Schnörr
Claudius Schnörr
JČJaroslav Červenka
Jaroslav Červenka
Marco HeurichMarco Heurich
Marco Heurich
Knowledge of forest structures—and of dead wood in particular—is fundamental to understanding, managing, and preserving the biodiversity of our forests. Lidar is a valuable technology for the area-wide mapping of trees in 3D because of its capability to penetrate vegetation. In essence, this technique enables the detection of single trees and their properties in all forest layers. This paper highlights a successful mapping of tree species—subdivided into conifers and broadleaf trees—and standing dead wood in a large forest 924 km2 in size. As a novelty, we calibrate the critical stopping criterion of the tree segmentation based on a normalized cut with regard to coniferous and broadleaf trees. The experiments were conducted in Šumava National Park and Bavarian Forest National Park. For both parks, lidar data were acquired at a point density of 55 points/m2. Aerial multispectral imagery was captured for Šumava National Park at a ground sample distance (GSD) of 17 cm and for Bavarian Forest National Park at 9.5 cm GSD. Classification of the two tree groups and standing dead wood—located in areas of pest infestation—is based on a diverse set of features (geometric, intensity-based, 3D shape contexts, multispectral-based) and well-known classifiers (Random forest and logistic regression). We show that the effect of under- and oversegmentation can be reduced by the modified normalized cut segmentation, thereby improving the precision by 13%. Conifers, broadleaf trees, and standing dead trees are classified with overall accuracies better than 90%. All in all, this experiment demonstrates the feasibility of large-scale and high-accuracy mapping of single conifers, broadleaf trees, and standing dead trees using lidar and aerial imagery.

3 August 2021 in Remote Sensing
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Journal Article
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KGKateřina Gdulová
Kateřina Gdulová
JMJana Marešová
Jana Marešová
VBVojtěch Barták
Vojtěch Barták
Marta SzostakMarta Szostak
Marta Szostak
JČJaroslav Červenka
Jaroslav Červenka
Vítězslav MoudrýVítězslav Moudrý
Vítězslav Moudrý
The availability of global digital elevation models (DEMs) from multiple time points allows their combination for analysing vegetation changes. The combination of models (e.g., SRTM and TanDEM-X) can contain errors, which can, due to their synergistic effects, yield incorrect results. We used a high-resolution LiDAR-derived digital surface model (DSM) to evaluate the accuracy of canopy height estimates of the aforementioned global DEMs. In addition, we subtracted SRTM and TanDEM-X data at 90 and 30 m resolutions, respectively, to detect deforestation caused by bark beetle disturbance and evaluated the associations of their difference with terrain characteristics. The study areas covered three Central European mountain ranges and their surrounding areas: Bohemian Forest, Erzgebirge, and Giant Mountains. We found that vertical bias of SRTM and TanDEM-X, relative to the canopy height, is similar with negative values of up to −2.5 m and LE90s below 7.8 m in non-forest areas. In forests, the vertical bias of SRTM and TanDEM-X ranged from −0.5 to 4.1 m and LE90s from 7.2 to 11.0 m, respectively. The height differences between SRTM and TanDEM-X show moderate dependence on the slope and its orientation. LE90s for TDX-SRTM differences tended to be smaller for east-facing than for west-facing slopes, and varied, with aspect, by up to 1.5 m in non-forest areas and 3 m in forests, respectively. Finally, subtracting SRTM and NASA DEMs from TanDEM-X and Copernicus DEMs, respectively, successfully identified large areas of deforestation caused by hurricane Kyril in 2007 and a subsequent bark beetle disturbance in the Bohemian Forest. However, local errors in TanDEM-X, associated mainly with forest-covered west-facing slopes, resulted in erroneous identification of deforestation. Therefore, caution is needed when combining SRTM and TanDEM-X data in multitemporal studies in a mountain environment. Still, we can conclude that SRTM and TanDEM-X data represent suitable near global sources for the identification of deforestation in the period between the time points of their acquisition.

3 February 2023 in European Journal of Entomology
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Journal Article
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BUBritta Uhl
Britta Uhl
VPVáclav Pouska
Václav Pouska
JČJaroslav Červenka
Jaroslav Červenka
PKPeter Karasch
Peter Karasch
CBClaus Bässler
Claus Bässler
Spruce forests face many threats such as climate change and bark beetle outbreaks. Yet, bark beetle dynamics have a long co-evolutionary history strongly linked to spruce forest structural dynamics. Disturbed spruce forest sites resulting from bark beetle outbreaks therefore should not be regarded as degraded land, but as early successional stages following natural forest dynamics. Three post-bark-beetle disturbance sites and one closed-canopy site in the Bavarian Forest and ?umava National Parks were investigated with the focus on moth communities. The three disturbed sites had undergone different post-disturbance management regimes, with one being treated by salvage logging, while at the other two forest sites deadwood was kept in the forest. To avoid the spread of bark beetles, however, the bark of dead trees was either gouged or removed. The aim was to determine how many moths can be found at the undisturbed and disturbed forest sites and if differences in community composition can be explained by different management regimes. The results highlight that natural forest disturbance can increase moth diversity, especially by favouring species that are associated with open and shrub habitats. Many rare and endangered species benefit from bark beetle outbreaks, indicating that accepting natural forest dynamics is an important part of conservation management. Post-bark beetle management seems to have a minor effect on moth communities.

4 May 2022 in IEEE Transactions on Geoscience and Remote Sensing
Verified
Journal Article
Open access
LALeonidas Alagialoglou
Leonidas Alagialoglou
Ioannis ManakosIoannis Manakos
Ioannis Manakos
MHMarco Heurich
Marco Heurich
JČJaroslav Červenka
Jaroslav Červenka
ADAnastasios Delopoulos
Anastasios Delopoulos
Global-scale canopy height mapping is an important tool for ecosystem monitoring and sustainable forest management. Various studies have demonstrated the ability to estimate canopy height from a single spaceborne multispectral image using end-to-end learning techniques. In addition to texture information of a single-shot image, our study exploits multitemporal information of image sequences to improve estimation accuracy. We adopt a convolutional variant of a long short-term memory (LSTM) model for canopy height estimation from multitemporal instances of Sentinel-2 products. Furthermore, we utilize the deep ensembles technique for meaningful uncertainty estimation on the predictions and postprocessing isotonic regression model for calibrating them. Our lightweight model ( ${\sim }320{\mathrm {k}}$ trainable parameters) achieves the mean absolute error (MAE) of $1.29 ~{\mathrm {m}}$ in a European test area of $79 ~{\mathrm {km}}^{2}$ . It outperforms the state-of-the-art methods based on single-shot spaceborne images as well as costly airborne images while providing additional confidence maps that are shown to be well calibrated. Moreover, the trained model is shown to be transferable in a different country of Europe using a fine-tuning area of as low as ${\sim }2 ~{\mathrm {km}}^{2}$ with ${\mathrm {MAE}}=1.94 {\mathrm {m}}$ .

4 September 2025 in bioRxiv
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Preprint
Open access
FFFabian Jörg Fischer
Fabian Jörg Fischer
BMBecky Morgan
Becky Morgan
TJToby Jackson
Toby Jackson
JCJérôme Chave
Jérôme Chave
DCDavid Coomes
David Coomes
TJTommaso Jucker
Tommaso Jucker
Woody canopies regulate exchanges of energy, water and carbon, and their three-dimensional (3D) structure supports much of terrestrial biodiversity. Remote sensing technologies such as airborne laser scanning (ALS) now enable the 3D mapping of entire landscapes. However, we lack the large, harmonized and geographically representative ALS collections needed to build a global picture of woody ecosystem structure. To address this challenge, we developed the Global Canopy Atlas (GCA): 3,458 ALS acquisitions transformed into standardized and analysis-ready maps of canopy height and elevation at 1 m 2 resolution. The GCA covers 56,554 km 2 across all major biomes. 19% of this area has been scanned multiple times, and 87% of all GCA products are openly available, covering 95% of the total area. To showcase its wide range of applications, we applied the GCA in three case studies. First, we validated three global satellite-derived canopy height maps, finding poor performance at native resolution (1-30 m, R 2 < 0.38) and moderate performance at 250 m resolution (R 2 < 0.65). Second, analyzing global patterns in canopy gap size frequency we discovered an unexpectedly large variation of power law exponents from branch to stand level (α = 1.52 to 2.38), pointing to a fundamental scale-dependence of forest structure. Third, we developed a framework to standardize forest turnover quantification from multi-source, multi-temporal ALS. In a temperate forest in North America it revealed that 21% of canopy gaps closed within 12 years of opening and would thus be missed by infrequent monitoring. As demonstrated by these case studies, the GCA provides a novel data source for ecologists, foresters, remote sensing scientists and the ecosystem modelling community that substantially advances our ability to understand the structure and dynamics of woody ecosystems at global scales.

5 December 2025 in Forest Ecology and Management
Verified
Journal Article
Open access
NHNikolaus Haas
Nikolaus Haas
MVMarc Velling
Marc Velling
MHMaik Henrich
Maik Henrich
WPWibke Peters
Wibke Peters
TPTomáš Peterka
Tomáš Peterka
MHMarco Heurich
Marco Heurich