Mangrove forests are salt-tolerant intertidal vegetation in tropical and subtropical areas. Mangrove ecosystems provide commercial products, valuable fisheries, and aquaculture resources, protect and stabilize coastlines, and are important carbon sinks. However, they are threatened globally by human activities such as deforestation, pollution, and development causing fragmentation between the well-preserved, restored, and disturbed mangrove forests. Despite this, mangroves can adapt and strive well and are notable well associated with microbial diversity. Here, we investigate the diversity of microbes in different environmental settings using preferred reporting items for systematic and meta-analyses (PRISMA) analysis for publications from Scopus and the Web of Science databases. We report publications since 1987, and observed an exponential increase in publications beginning in the year 2000, which may be associated with the development of molecular and sequencing technologies. Differences in bacterial diversity was observed across the well-preserved, restored, and disturbed mangrove environments. Disturbed mangrove forests had a higher diversity (70 unique taxon orders reported) compared to well-preserved (33 unique taxon orders reported) and restored forests (38 unique taxon orders reported). Based on our analysis, we found that the microbial community plays an important role in the survival and adaptability of mangroves under varying environmental conditions. Thus, there is a need and a lot of potential for research in the area of mangrove microbiology with reference to ecology, biogeochemistry, and geomorphology.

Blue carbon ecosystems in the Karimunjawa Islands may play a vital role in absorbing and storing the releasing carbon from the Java Sea. The present study investigated mangrove above-ground biomass (AGB) and carbon stock in the Karimunjawa-Kemujan Islands, the largest mangrove area in the Karimunjawa Islands. Taking the aerial photos from an Unmanned Aerial Vehicle combined with Global Navigation Satellite System (GNSS) measurements, we generated Digital Surface Model (DSM) and Digital Terrain Model (DTM) with high accuracy. We calculated mangrove canopy height by subtracting DSM from DTM and then converted it into Lorey’s height. The highest mangrove canopy is located along the coastline facing the sea, ranging from 8 m to 15 m. Stunted mangroves 1 m to 8 m in height are detected mainly in the inner areas. AGBs were calculated using an allometric equation destined for the Southeast and East Asia region. Above-ground carbon biomass is half of AGB. The AGB and carbon biomass of mangroves in the Karimunjawa-Kemujan Islands range from 8 Mg/ha to 328 Mg/ha, and from 4 MgC/ha to 164 MgC/ha, respectively. With a total area of 238.98 ha, the potential above-ground carbon stored in the study area is estimated as 16,555.46 Mg.

Allometric models to estimate biomass components such as stem mass M_s, foliage mass M_l, root mass M_r and aboveground mass M_a, were developed for the palm species Euterpe precatoria Mart., which is the most abundant tree species in the Amazon. We harvested twenty palms including above- and below-ground parts in an old growth Amazonian forest in Brazil. The diameter at breast height D ranged from 3.9–12.7 cm, and the stem height H ranged from 2.3–16.4 m. The D, diameter at ground basis D₀, crown diameter CD, H, stem specific gravity ρ, and number of fronds N_f were considered as independent variables and incorporated into a power function model. The best predictors were D²Hρ for M_s and M_a, D²HN_f for M_l, and D for M_r. Slender index (H/D) ranged from 0.56–1.46 m·cm⁻¹, and the D-H relationship suggested that the stem shape becomes more slender with increasing D. On the other hand, ρ increased with D implying a stiffening of stem tissue. The average root/shoot ratio was estimated as 0.29 which was higher than that reported for the non-palm tree species in the Amazon. Comparisons of several models to estimate M_a of different palm species, suggested that the variations of the D-H relationship and ρ should be considered to develop allometric models for estimating biomass in palm species. In particular the ρ largely varied depending on individual size, which should be important to consider, when developing the allometric models for palms.

The light-penetration pattern for a mangrove Kandelia obovata canopy was analyzed considering the vertical changes in the light-extinction coefficients for leaves and woody organs. Furthermore, canopy photosynthesis and foliage respiration were estimated on the basis of the constructed light-penetration models. The canopy structure and light-penetration pattern were investigated by use of a destructive method. Seasonal changes in photosynthetic light-response curves and dark respiration of leaves were measured at different canopy depths. The main findings of this study were: (1) the ratio of the cumulative woody silhouette area density C to the cumulative leaf area density F increased downward within the canopy; (2) the light-extinction coefficient for leaves increased from 0.30 to 0.72 downward and the light-extinction coefficient for woody organs was almost constant at 0.77; and (3) ignoring the woody organs and the vertical change in the C/F ratio and light-extinction coefficients for leaves caused ca. ±10 and ±20% errors in annual canopy gross photosynthesis and surplus production, respectively.