Ryan Emenecker

Mr. Ryan Emenecker

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 October 2021 in Biophysical Journal
Verified
Journal Article
Closed access
RERyan Emenecker
Ryan Emenecker
DGDaniel Griffith
Daniel Griffith
AHAlex S. Holehouse
Alex S. Holehouse

1 October 2019 in Molecular Cell
Verified
Journal Article
Closed access
SPSamantha K. Powers
Samantha K. Powers
AHAlex S. Holehouse
Alex S. Holehouse
DKDavid Korasick
David Korasick
KSKatherine H. Schreiber
Katherine H. Schreiber
NCNatalie Clark
Natalie Clark
LSLucia C. Strader
Lucia C. Strader

12 February 2020 in Biomolecules
Verified
Journal Article
Open access
PDF file
RERyan Emenecker
Ryan Emenecker
LSLucia C. Strader
Lucia C. Strader
Plant hormones regulate many aspects of plant growth, development, and response to biotic and abiotic stress. Much research has gone into our understanding of individual plant hormones, focusing primarily on their mechanisms of action and the processes that they regulate. However, recent research has begun to focus on a more complex problem; how various plant hormones work together to regulate growth and developmental processes. In this review, we focus on two phytohormones, abscisic acid (ABA) and auxin. We begin with brief overviews of the hormones individually, followed by in depth analyses of interactions between auxin and ABA, focusing on interactions in individual tissues and how these interactions are occurring where possible. Finally, we end with a brief discussion and future prospects for the field.

22 May 2025 in Science
Verified
Journal Article
Closed access
GGGarrett M. Ginell
Garrett M. Ginell
RERyan Emenecker
Ryan Emenecker
JLJeffrey M. Lotthammer
Jeffrey M. Lotthammer
AKAlex T. Keeley
Alex T. Keeley
SPStephen P. Plassmeyer
Stephen P. Plassmeyer
AHAlex S. Holehouse
Alex S. Holehouse
Intrinsically disordered regions (IDRs) in proteins play essential roles in cellular function. A growing body of work has shown that IDRs often interact with partners in a manner that does not depend on the precise order of amino acids but is instead driven by complementary chemical interactions, leading to disordered bound-state complexes. However, these chemically specific dynamic interactions are difficult to predict. In this study, we repurposed the chemical physics developed originally for molecular simulations to predict this chemical specificity between IDRs and partner proteins using protein sequence as the only input. Our approach—FINCHES—enables the direct prediction of phase diagrams, the identification of chemically specific interaction hotspots on IDRs, the decomposition of chemically distinct domains in IDRs, and a route to develop and test mechanistic hypotheses regarding IDR function in molecular recognition.

13 January 2020 in Nature Food
Verified
Journal Article
Open access
PDF file
RCRATAN CHOPRA
RATAN CHOPRA
EJEvan B. Johnson
Evan B. Johnson
RERyan Emenecker
Ryan Emenecker
ECEdgar B. Cahoon
Edgar B. Cahoon
JLJoe Lyons
Joe Lyons
DMDavid Marks
David Marks
The oilseed species Thlaspi arvense (pennycress)—a weed that was only recently removed from the wild—has the potential to provide new sources of food and bioproducts when grown as a winter cover crop. Domestication of wild species has historically taken hundreds to thousands of years, but by making use of large-scale high-throughput comparative gene and phenotype analyses, along with recently developed technological tools, it has been possible to greatly accelerate this process. By taking advantage of extensive gene and phenotype knowledge in the related plant Arabidopsis, mutations for early maturity, reduced pod shatter, reduced seed glucosinolates and improved fatty acid composition were identified. Progress has been made to rapidly stack these traits in order to domesticate the plant, allowing it to fit within current crop cycles and to have improved seed harvestability and nutritional content. Pennycress, domesticated as a winter cover crop, may provide new sources of food, animal feed and bioproducts—and solutions to food security.

24 May 2018 in Plant Biotechnology Journal
Verified
Journal Article
Open access
PDF file
LTLaurence Tomlinson
Laurence Tomlinson
YYYing Yang
Ying Yang
RERyan Emenecker
Ryan Emenecker
MSMatthew Smoker
Matthew Smoker
JTJodie Taylor
Jodie Taylor
JJJonathan D. G. Jones
Jonathan D. G. Jones
Summary: The tomato PROCERA gene encodes a DELLA protein, and loss‐of‐function mutations derepress growth. We used CRISPR/Cas9 and a single guide RNAs (sgRNA) to target mutations to the PROCERA DELLA domain, and recovered several loss‐of‐function mutations and a dominant dwarf mutation that carries a deletion of one amino acid in the DELLA domain. This is the first report of a dominant dwarf PROCERA allele. This allele retains partial responsiveness to exogenously applied gibberellin. Heterozygotes show an intermediate phenotype at the seedling stage, but adult heterozygotes are as dwarfed as homozygotes.