Alexander Baker

Dr. Alexander Baker

Mayo Clinic Center for Individualized medicine
+2
orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 December 2021 in Science Advances
Verified
Journal Article
Open access
Alexander BakerAlexander Baker
Alexander Baker
RBRyan J. Boyd
Ryan J. Boyd
DSDaipayan Sarkar
Daipayan Sarkar
ATAlicia Teijeira-Crespo
Alicia Teijeira-Crespo
CCChun Kit Chan
Chun Kit Chan
MBMitesh J. Borad
Mitesh J. Borad
We observe previously unknown interactions between clinically important adenovirus vector capsids, platelet factor 4, and CAR.

6 September 2019 in Science Advances
Verified
Journal Article
Open access
PDF file
Alexander BakerAlexander Baker
Alexander Baker
RMRosie M. Mundy
Rosie M. Mundy
JDJames A. Davies
James A. Davies
PRPierre J Rizkallah
Pierre J Rizkallah
Alan ParkerAlan Parker
Alan Parker
Human adenovirus type 26 uses sialic acid as a primary cellular receptor—structural insights for this phase 3 vaccine vector.

1 February 2021 in Current Problems in Cancer
Verified
Journal Article
Closed access
NGNasser Hashemi Goradel
Nasser Hashemi Goradel
Alexander BakerAlexander Baker
Alexander Baker
AAArash Arashkia
Arash Arashkia
NENasim Ebrahimi
Nasim Ebrahimi
SGSajjad Ghorghanlu
Sajjad Ghorghanlu
BNBabak Negahdari
Babak Negahdari

14 June 2018 in Cancers
Verified
Journal Article
Open access
PDF file
Alexander BakerAlexander Baker
Alexander Baker
CACarmen Aguirre-Hernández
Carmen Aguirre-Hernández
Gunnel HalldénGunnel Halldén
Gunnel Halldén
Alan ParkerAlan Parker
Alan Parker
The licensing of talimogene laherparepvec (T-Vec) represented a landmark moment for oncolytic virotherapy, since it provided unequivocal evidence for the long-touted potential of genetically modified replicating viruses as anti-cancer agents. Whilst T-Vec is promising as a locally delivered virotherapy, especially in combination with immune-checkpoint inhibitors, the quest continues for a virus capable of specific tumour cell killing via systemic administration. One candidate is oncolytic adenovirus (Ad); it’s double stranded DNA genome is easily manipulated and a wide range of strategies and technologies have been employed to empower the vector with improved pharmacokinetics and tumour targeting ability. As well characterised clinical and experimental agents, we have detailed knowledge of adenoviruses’ mechanisms of pathogenicity, supported by detailed virological studies and in vivo interactions. In this review we highlight the strides made in the engineering of bespoke adenoviral vectors to specifically infect, replicate within, and destroy tumour cells. We discuss how mutations in genes regulating adenoviral replication after cell entry can be used to restrict replication to the tumour, and summarise how detailed knowledge of viral capsid interactions enable rational modification to eliminate native tropisms, and simultaneously promote active uptake by cancerous tissues. We argue that these designer-viruses, exploiting the viruses natural mechanisms and regulated at every level of replication, represent the ideal platforms for local overexpression of therapeutic transgenes such as immunomodulatory agents. Where T-Vec has paved the way, Ad-based vectors now follow. The era of designer oncolytic virotherapies looks decidedly as though it will soon become a reality.

14 February 2019 in Nature Communications
Verified
Journal Article
Open access
PDF file
Alexander BakerAlexander Baker
Alexander Baker
AGAlexander Greenshields-Watson
Alexander Greenshields-Watson
LCLynda Coughlan
Lynda Coughlan
JDJames A. Davies
James A. Davies
HUHanni Uusi-Kerttula
Hanni Uusi-Kerttula
Alan ParkerAlan Parker
Alan Parker
Adenovirus based vectors are of increasing importance for wide ranging therapeutic applications. As vaccines, vectors derived from human adenovirus species D serotypes 26 and 48 (HAdV-D26/48) are demonstrating promising efficacy as protective platforms against infectious diseases. Significant clinical progress has been made, yet definitive studies underpinning mechanisms of entry, infection, and receptor usage are currently lacking. Here, we perform structural and biological analysis of the receptor binding fiber-knob protein of HAdV-D26/48, reporting crystal structures, and modelling putative interactions with two previously suggested attachment receptors, CD46 and Coxsackie and Adenovirus Receptor (CAR). We provide evidence of a low affinity interaction with CAR, with modelling suggesting affinity is attenuated through extended, semi-flexible loop structures, providing steric hindrance. Conversely, in silico and in vitro experiments are unable to provide evidence of interaction between HAdV-D26/48 fiber-knob with CD46, or with Desmoglein 2. Our findings provide insight into the cell-virus interactions of HAdV-D26/48, with important implications for the design and engineering of optimised Ad-based therapeutics.

1 September 2018 in Clinical Cancer Research
Verified
Journal Article
Open access
PDF file
HUHanni Uusi-Kerttula
Hanni Uusi-Kerttula
JDJames A. Davies
James A. Davies
JTJill M. Thompson
Jill M. Thompson
PWPhonphimon Wongthida
Phonphimon Wongthida
LELaura Evgin
Laura Evgin
Alan ParkerAlan Parker
Alan Parker
Purpose: Virotherapies are maturing in the clinical setting. Adenoviruses (Ad) are excellent vectors for the manipulability and tolerance of transgenes. Poor tumor selectivity, off-target sequestration, and immune inactivation hamper clinical efficacy. We sought to completely redesign Ad5 into a refined, tumor-selective virotherapy targeted to αvβ6 integrin, which is expressed in a range of aggressively transformed epithelial cancers but nondetectable in healthy tissues. Experimental Design: Ad5NULL-A20 harbors mutations in each major capsid protein to preclude uptake via all native pathways. Tumor-tropism via αvβ6 targeting was achieved by genetic insertion of A20 peptide (NAVPNLRGDLQVLAQKVART) within the fiber knob protein. The vector's selectivity in vitro and in vivo was assessed. Results: The tropism-ablating triple mutation completely blocked all native cell entry pathways of Ad5NULL-A20 via coxsackie and adenovirus receptor (CAR), αvβ3/5 integrins, and coagulation factor 10 (FX). Ad5NULL-A20 efficiently and selectively transduced αvβ6+ cell lines and primary clinical ascites-derived EOC ex vivo, including in the presence of preexisting anti-Ad5 immunity. In vivo biodistribution of Ad5NULL-A20 following systemic delivery in non–tumor-bearing mice was significantly reduced in all off-target organs, including a remarkable 107-fold reduced genome accumulation in the liver compared with Ad5. Tumor uptake, transgene expression, and efficacy were confirmed in a peritoneal SKOV3 xenograft model of human EOC, where oncolytic Ad5NULL-A20–treated animals demonstrated significantly improved survival compared with those treated with oncolytic Ad5. Conclusions: Oncolytic Ad5NULL-A20 virotherapies represent an excellent vector for local and systemic targeting of αvβ6-overexpressing cancers and exciting platforms for tumor-selective overexpression of therapeutic anticancer modalities, including immune checkpoint inhibitors. Clin Cancer Res; 24(17); 4215–24. ©2018 AACR.