Continouous unmanned aerial vehicle (UAV) missions are fundamentally limited by Lithium-Polymer (LiPo) battery endurance under intermittent and power-constrained renewable energy conditions. This paper proposes an integrated energy management and charging framework for a photovoltaic (PV)-powered mobile station equipped with a hybrid energy storage system (HESS) and an automated battery replacement (ABR) mechanism. A lexicographic priority-based allocator sequentially serves ABR actuation, multi-slot LiPo charging, and Brushless DC (BLDC) propulsion, while the HESS compensates for PV intermittency. At the charging level, a constraint-aware constant current–constant voltage (CC–CV) strategy is enhanced by an adaptive neuro-fuzzy inference system (ANFIS) trained on optimization-derived labels using battery temperature and its rate of change, thus enabling anticipatory thermal current derating with smooth, discontinuity-free control action. Anti-windup proportional–integral (PI) regulation and bumpless mode transfer ensure stable CC-to-CV transitions. An event-triggered emergency mode accelerates battery readiness via a max-first selection policy. Comparative simulations against a PSO/DE-optimized PID benchmark over a full diurnal PV cycle demonstrate that the ANFIS controller reduces the CC-mode current tracking root-mean-square error (RMSE) by up to 96.9%, delivers higher charge throughput, and lowers battery degradation proxies, including SOC-weighted thermal dose and equivalent full cycles (EFC). The proposed framework reliably sustains continuous charge–swap–recharge logistics under fluctuating renewable generation.