Dirty panicle disease is one of the most important diseases that can cause yield losses in rice production. Despite the severity of the disease, the molecular basis of resistance to the pathogen is poorly understood. Using QTL-seq with an F₂ population, we identified three genomic regions on chromosomes 1, 9, and 10, namely qDP1, qDP9, and qDP10. These regions are significantly associated with resistance to dirty panicle disease caused by two fungal pathogens, Bioplaris oryzae and Cirvularia lunata. qDP1 was significantly associated only with resistance to B. oryzae, whereas qDP9 and qDP10 were significantly associated with both B. oryzae and C. lunata. We also developed KASP markers for each QTL detected and validated them in the F₂ population. The markers were able to explain phenotypic variation in a range of 5.87–15.20%. Twelve potential candidate genes with annotated functions as resistance-related genes were proposed. These candidate genes include those encoding RLK, MATE, WAK, NBS-LRR, subtilisin-like protease, and ankyrin repeat proteins. The results of this study provide insights into the genetic mechanism of dirty panicles in rice and will be useful for future breeding programs for dirty panicle resistance. This is the first report of QTLs associated with resistance to dirty panicle disease in rice.

Waxy maize (Zea mays L. var. ceratina) is a special type of maize characterized by a sticky texture when cooked, due to high amylopectin content in the endosperm. Waxy maize is popular in China and Southeast Asia for fresh consumption. Breeding strategies have been used to improve the quality of waxy maize, including hybrid breeding by crossing super sweet maize and waxy maize. However, the lack of a marker has limited the efficiency of breeding for the waxy trait, especially because the waxy allele is recessive. In this study, we conducted a genome-wide association study (GWAS) in an association panel consisting of 213 inbred lines and recombinant inbred lines (RILs) of field maize and waxy maize to identify loci associated with the waxy kernel phenotype. The genotypic data were 155,768 SNPs derived from the high-density 600 K maize genotyping array for single-nucleotide polymorphisms (SNPs). The GWAS results identified the qWx9 locus on chromosome 9 (25.06–25.18 Mb) associated with the trait. Based on the most significantly associated SNP (AX-90613979, −log10(P) = 6.8)), which was located on Wx1, a MassArray marker was developed and validated in a panel of 139 maize lines containing waxy maize and sweet maize with different amylose content. The newly developed marker had a significant association with amylose content (R² value of 0.81, p < 0.001) and clearly distinguished between waxy maize and sweet maize lines that had different amylose content. This marker will be useful for maize breeding programs for the waxy trait, as well as for breeding programs for hybrid maize combining the sweetness and waxy traits. The gene-based SNP markers could aid breeders by eliminating the costs and time required to perform lengthy field trials and help to accelerate sweet maize and waxy maize breeding programs.

Paramyrothecium eichhorniae sp. nov. was observed and collected from Chiang Mai and Phetchaburi Provinces, Thailand. This new species is introduced based on morphological and molecular evidence. This fungus is characterized by its production of sporodochium conidiomata with a white setose fringe surrounding an olivaceous green to dark green slimy mass of conidia, penicillately branched conidiophores, and aseptate and cylindrical to ellipsoid conidia. Phylogenetic analyses of combined LSU rDNA, ITS rDNA, tef1, rpb2, tub2 and cmdA sequence data using maximum parsimony, maximum likelihood and Bayesian approaches placed the fungus in a strongly supported clade with other Paramyrothecium species in Stachybotryaceae (Hypocreales, Sordariomycetes). The descriptions of the species are accompanied by illustrations of morphological features, and a discussion of the related taxa is presented.

Sheath rot and dirty panicle are some of the major diseases of rice in Thailand. The diseases are traditionally considered to be caused by the pathogen Sarocladium oryzae and damage and lower both the quantity and quality of rice grain. In this study, 32 fungal isolates collected from the central and northeastern regions of Thailand were analysed phylogenetically using three molecular markers (ITS, D1/D2 of 28S rDNA and ACT) and physiological races were determined on 10 differential rice cultivars. We found that S. oryzae is not the only causal agent of sheath rot in Thailand, but S. attenuatum was also found. Despite having similar morphological features, the phylogenetic analysis recognised 11 of 32 isolates as S. attenuatum and the remaining isolates as S. oryzae. This is the first report of S. attenuatum causing sheath rot of rice in Thailand in addition to S. oryzae. Evaluation of physiological races revealed high pathogenic diversity of the two species. Thus, 16 and 11 physiological races were recorded from 21 isolates of S. oryzae and 11 isolates of S. attenuatum, respectively. These results indicate that both S. oryzae and S. attenuatum are the causal agents of rice sheath rot and dirty panicle in Thailand and that they are pathologically diverse.

Fusarium wilt in bitter gourd caused by Fusarium oxysporum f. sp. momordicae (Fomo) is a severe plant disease that affects the world’s bitter gourd (Momordica charantia L.) cultivation. This study evaluated nine luffa hybrids for their performance as rootstocks with bitter gourd to control Fusarium oxysporum f. sp. luffae (Folu) isolate Fomh16 and Fomo isolate Fomo33. In the first evaluation, five hybrids (LF1, LF2, LF3, LF15, and LF16) exhibited resistance to the Fomh16 isolate and showed no symptoms. One hybrid, LF10, was resistant with a mean disease rating (MDR) of 0.9 at 28 days post-inoculation (dpi). Seven luff hybrids that displayed resistant and moderate resistance in the first evaluation were used as rootstocks with susceptible bitter gourd cultivars. Five rootstocks exhibited high resistance to Fomh16 and Fomo33 isolates, with their MDR ranging from 0.0 to 0.7. In addition, the findings revealed that both isolates could colonize the vascular bundle of all resistant luffa rootstocks at 28 dpi. However, the Fomo33 isolate could extend and colonize the vascular bundle of bitter gourd scion when grafted only with rootstock LF5 and LF11. The quantitative PCR results indicated that there were significant differences in the amount of the Fomo33 DNA between the bitter gourd grafted onto LF15 and LF16 rootstocks and the self-grafted plants; however, the pathogen cannot be detected in the bitter gourd scions grafted with resistant rootstocks. These findings provide valuable resistant sources that can be used as rootstocks to manage Fusarium wilt disease in bitter gourd.

Rice dirty panicle disease is one of the most important problems in Thailand. The fungal pathogens were reported to be many species including Curvularia lunata, Bipolaris oryzae, Fusarium incarnatum, Sarocladium oryzae, Trichoconis padwickii and Cercospora oryzae. Biological control is an alternative method for controlling this disease and reducing the application of fungicides. Therefore, this study aimed to evaluate the antagonistic potential of bacteria isolated from peat swamp forests in Thailand. A total of 513 bacterial isolates were collected and screened in the laboratory using the dual culture method. The results revealed that three of the 513 bacterial strains (IBK-4, IBK-8 and IBK-5) were highly inhibitory to the fungal pathogens including C. lunata, B. oryzae and F. incarnatum. These three strains were identified as Bacillus (IBK-4 and IBK-8) and Brevibacillus (IBK-5) based on 16S rRNA sequencing. Then, these three strains were evaluated on a susceptible rice variety by inoculation with three fungal pathogens. The results indicated that Bacillus strain IBK-8 had the highest efficiency to control the disease development as observed in the disease severity and index. The results of this study indicated that bacterial strains from peat swamp forests have the potential to be antagonistic to plant pathogens.