Methyl halide gases are important sources of atmospheric inorganic halogen compounds, which in turn are central reactants in many stratospheric and tropospheric chemical processes. By observing emissions of methyl chloride, methyl bromide, and methyl iodide from flooded California rice fields, we estimate the impact of rice agriculture on the atmospheric budgets of these gases. Factors influencing methyl halide emissions are stage of rice growth, soil organic content, halide concentrations, and field-water management. Extrapolating our data implies that about 1 percent of atmospheric methyl bromide and 5 percent of methyl iodide arise from rice fields worldwide. Unplanted flooded fields emit as much methyl chloride as planted, flooded rice fields.

Volatile compounds contained in human breath reflect the inner workings of the body. A large number of studies have been published that link individual components of breath to disease, but diagnostic applications remain limited, in part due to inconsistent and conflicting identification of breath biomarkers. New approaches are therefore required to identify effective biomarker targets. Here, volatile organic compounds have been identified in the literature from four metabolically and physiologically distinct diseases and grouped into chemical functional groups (e.g. methylated hydrocarbons or aldehydes; based on known metabolic and enzymatic pathways) to support biomarker discovery and provide new insight on existing data. Using this functional grouping approach, principal component analysis doubled explanatory capacity from 19.1% to 38% relative to single individual compound approaches. Random forest and linear discriminant analysis reveal 93% classification accuracy for cancer. This review and meta-analysis provides insight for future research design by identifying volatile functional groups associated with disease. By incorporating our understanding of the complexities of the human body, along with accounting for variability in methodological and analytical approaches, this work demonstrates that a suite of targeted, functional volatile biomarkers, rather than individual biomarker compounds, will improve accuracy and success in diagnostic research and application.

Glucosinolates, anionic sulfur rich secondary metabolites, have been extensively studied because of their occurrence in the agriculturally important brassicaceae and their impact on human and animal health. There is also increasing interest in the biofumigant properties of toxic glucosinolate hydrolysis products as a method to control agricultural pests. Evaluating biofumigation potential requires rapid and accurate quantification of glucosinolates, but current commonly used methods of extraction prior to analysis involve a number of time consuming and hazardous steps; this study aimed to develop an improved method for glucosinolate extraction. Three methods previously used to extract glucosinolates from brassicaceae tissues, namely extraction in cold methanol, extraction in boiling methanol, and extraction in boiling water were compared across tissue type (root, stem leaf) and four brassicaceae species (B. juncea, S. alba, R. sativus, and E. sativa). Cold methanol extraction was shown to perform as well or better than all other tested methods for extraction of glucosinolates with the exception of glucoraphasatin in R. sativus shoots. It was also demonstrated that lyophilisation methods, routinely used during extraction to allow tissue disruption, can reduce final glucosinolate concentrations and that extracting from frozen wet tissue samples in cold 80% methanol is more effective. We present a simplified method for extracting glucosinolates from plant tissues which does not require the use of a freeze drier or boiling methanol, and is therefore less hazardous, and more time and cost effective. The presented method has been shown to have comparable or improved glucosinolate extraction efficiency relative to the commonly used ISO method for major glucosinolates in the Brassicaceae species studied: sinigrin and gluconasturtiin in B. juncea; sinalbin, glucotropaeolin, and gluconasturtiin in S. alba; glucoraphenin and glucoraphasatin in R. sativus; and glucosatavin, glucoerucin and glucoraphanin in E. sativa.

Summary: Associational resistance to herbivore and pathogen attack is a well documented ecological phenomenon and, if applied to agriculture, may reduce impact of pests and diseases on crop yields without recourse to pesticides. The value of associational resistance through intercropping, planting multiple crops alongside each other, as a sustainable control method remains unclear, due to variable outcomes reported in the published literature. We performed a meta‐analysis to provide a quantitative assessment of benefits of intercropping for target plant resistance to plant‐parasitic nematodes and soil‐borne diseases. We found that intercropping reduced damage to focal crops from nematodes by 40% and disease incidence by 55%. Intercropping efficacy varied with biological variables, such as field fertilisation status and intercrop family, and methodology, including whether study samples were potted or in fields. Nematode control using intercropping was sufficient to offset reductions in focal crop yield from intercrop presence, making intercropping a viable agricultural tool. We identify key drivers for underpinning the success of intercropping and indicate areas for future research to improve efficacy. This study also highlights the potential benefits of harnessing ecological knowledge on plant–enemy interactions for improving agricultural and landscape sustainability.

We explore the dynamics of the subsurface sulfur, iron and carbon cycles in salt marsh sediments from East Anglia, United Kingdom. We report measurements of pore fluid and sediment geochemistry, coupled with results from laboratory sediment incubation experiments, and develop a conceptual model to describe the influence of bioturbation on subsurface redox cycling. In the studied sediments the subsurface environment falls into two broadly defined geochemical patterns – iron-rich sediments or sulfide-rich sediments. Within each sediment type nearly identical pore fluid and solid phase geochemistry (in terms of concentrations of iron, sulfate, sulfide, dissolved inorganic carbon (DIC), and the sulfur and oxygen isotope compositions of sulfate) are observed in sediments that are hundreds of kilometers apart. Strictly iron-rich and strictly sulfide-rich sediments, despite their substantive geochemical differences, are observed within spatial distances of less than five meters. We suggest that this bistable system results from a series of feedback reactions that determine ultimately whether sediments will be sulfide-rich or iron-rich. We suggest that an oxidative cycle in the iron-rich sediment, driven by bioirrigation, allows rapid oxidation of organic matter, and that this irrigation impacts the sediment below the immediate physical depth of bioturbation. This oxidative cycle yields iron-rich sediments with low total organic carbon, dominated by microbial iron reduction and no methane production. In the absence of bioirrigation, sediments in the salt marsh become sulfide-rich with high methane concentrations. Our results suggest that the impact of bioirrigation not only drives recycling of sedimentary material but plays a key role in sedimentary interactions among iron, sulfur and carbon.

Stable carbon isotope ratios for 37 hydrocarbon, CFC and halocarbon compounds were determined over the course of 1 year (86 samples) from the urban Belfast environment, Northern Ireland (NI). A smaller number of samples were collected from rural locations at Crossgar and Hillsborough, NI, and one marine location at Mace Head, Republic of Ireland. Source δ¹³C “signatures” suggest that C5 alkanes and ≥C4 alkenes are most likely derived from vehicle emissions. C3–C5 hydrocarbons show significant enrichment of δ¹³C with iso‐alkanes < n‐alkanes < alkenes < alkynes. There is also significant enrichment of δ¹³C from propane to n‐butane to n‐pentane. There is no significant separation between n‐pentane, n‐hexane, n‐heptane or methyl‐butane, methyl pentane and methyl hexanes. Calculated hydroxyl reaction kinetic isotope effects and subsequent δ¹³C enrichment are insufficient to explain shifts in isotopic ratio relative to concentration for all compounds as is differences in origin of air mass. Very few compounds show significant diurnal shifts; however, alkanes and ≥C4 alkenes demonstrate consistent enrichment of isotopic ratios when summer samples are compared to winter samples. Benzene is the sole compound measured that appears to become more depleted in δ¹³C when summer samples are compared against winter samples. Urban air, sampled at Belfast, which has originated in Europe shows enriched values for hydrocarbons while air which has originated in the Arctic Ocean is most similar to marine air off the Atlantic, sampled at Mace Head, Ireland.