Joseph Michael Ochieng Oduor

Dr. Joseph Michael Ochieng Oduor

KAVI-Institute of Clinical Research, College of Health Sciences, University of Nairobi
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Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 January 2020 in Viruses
Verified
Journal Article
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JOJoseph Michael Ochieng Oduor
Joseph Michael Ochieng Oduor
EKErmir Kadija
Ermir Kadija
ANAtunga Nyachieo
Atunga Nyachieo
Marianne MureithiMarianne Mureithi
Marianne Mureithi
Mikael SkurnikMikael Skurnik
Mikael Skurnik
Emergence of antibiotic-resistant bacteria is a serious threat to the public health. This is also true for Staphylococcus aureus and other staphylococci. Staphylococcus phages Stab20, Stab21, Stab22, and Stab23, were isolated in Albania. Based on genomic and phylogenetic analysis, they were classified to genus Kayvirus of the subfamily Twortvirinae. In this work, we describe the in-depth characterization of the phages that electron microscopy confirmed to be myoviruses. These phages showed tolerance to pH range of 5.4 to 9.4, to maximum UV radiation energy of 25 µJ/cm2, to temperatures up to 45 °C, and to ethanol concentrations up to 25%, and complete resistance to chloroform. The adsorption rate constants of the phages ranged between 1.0 × 10−9 mL/min and 4.7 × 10−9 mL/min, and the burst size was from 42 to 130 plaque-forming units. The phages Stab20, 21, 22, and 23, originally isolated using Staphylococcus xylosus as a host, demonstrated varied host ranges among different Staphylococcus strains suggesting that they could be included in cocktail formulations for therapeutic or bio-control purpose. Phage particle proteomes, consisting on average of ca 60–70 gene products, revealed, in addition to straight-forward structural proteins, also the presence of enzymes such DNA polymerase, helicases, recombinases, exonucleases, and RNA ligase polymer. They are likely to be injected into the bacteria along with the genomic DNA to take over the host metabolism as soon as possible after infection.

24 November 2016 in The Journal of Infection in Developing Countries
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Journal Article
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JOJoseph Michael Ochieng Oduor
Joseph Michael Ochieng Oduor
NONyamongo Onkoba
Nyamongo Onkoba
FMFredrick Maloba
Fredrick Maloba
WAWashingtone Ouma Arodi
Washingtone Ouma Arodi
ANAtunga Nyachieo
Atunga Nyachieo
Introduction: The use of bacteriophages as an alternative treatment method against multidrug-resistant bacteria has not been explored in Kenya. This study sought to determine the efficacy of environmentally obtained lytic bacteriophage against multidrug-resistant Staphylococcus aureus (MDRSA) bacterium in mice. Methodology: Staphylococcus aureus bacterium and S. aureus-specific lytic phage were isolated from sewage and wastewater collected within Nairobi County, Kenya. Thirty mice were randomly assigned into three groups: MDRSA infection group (n = 20), phage-infection group (n = 5), and non-infection group (n = 5). The MDRSA infection group was further subdivided into three groups: clindamycin treatment (8 mg/kg; n = 5), lytic phage treatment (108 PFU/mL (n = 5), and a combination treatment of clindamycin and lytic phage (n = 5). Treatments were done at either 24 or 72 hours post-infection (p.i), and data on efficacy, bacterial load, and animal physical health were collected. Results: Treatment with phage was more effective (100%) than with clindamycin (62.25% at 24 hours p.i and 87.5% at 72 hours p.i.) or combination treatment (75% at 24 hours p.i. and 90% at 72 hours p.i.) (p < 0.001). Conclusions: The results show that the environmentally obtained S. aureus lytic bacteriophage has therapeutic potential against MDRSA bacterium in mice.

1 February 2016 in African Journal of Laboratory Medicine
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Journal Article
Open access
JOJoseph Michael Ochieng Oduor
Joseph Michael Ochieng Oduor
NONyamongo Onkoba
Nyamongo Onkoba
FMFredrick Maloba
Fredrick Maloba
ANAtunga Nyachieo
Atunga Nyachieo
Background: Community-acquired haematogenous Staphylococcus aureus pneumonia is a rare infection, though it can be acquired nosocomially. Currently, antibiotics used against S. aureus pneumonia have shown reduced efficacy. Thus, there is need for an alternative therapy against multidrug-resistant S. aureus (MDRSA) strains in the community.Objective: We sought to determine the efficacy of environmentally-obtained S. aureus lytic phage against haematogenous MDRSA pneumonia in mice.Methods: Phages and MDRSA were isolated from sewage samples collected within Nairobi County, Kenya. Isolated S. aureus bacteria were screened for resistance against ceftazidime, oxacillin, vancomycin, netilmicin, gentamicin, erythromycin, trimethroprim-sulfamethoxazole and cefuroxime. Thirty BALB/c mice aged six to eight weeks were randomly assigned into three groups: the MDRSA-infection group (n = 20), the phage-infection group (n = 5) and the non-infection group (n = 5). Mice were infected with either MDRSA or phage (108 CFU/mL) and treated after 72 hours with a single dose of clindamycin (8 mg/kg/bwt) or 108 PFU/mL of phage or a combination therapy (clindamycin and phage). The efficacy of phage, clindamycin or clindamycin with phage combination was determined using resolution of lung pathology and bacterial load in lung homogenates.Results: The viable MDRSA count was 0.5 ± 0.2 log10 CFU/gm in the phage-treated group, 4.4 ± 0.2 log10 CFU/gm in the clindamycin-treated group and 4.0 ± 0.2 log10 CFU/gm in the combination-treated group. The efficacy of phage therapy was significantly different from other therapeutic modes (p = 0 < 0.0001). Histology showed that the mice treated with phage did not develop pneumonia.Conclusion: Phage therapy is effective against haematogenous MDRSA infection. Thus, it can be explored as an alternative treatment method.

15 May 2019 in Archives of Virology
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JOJoseph Michael Ochieng Oduor
Joseph Michael Ochieng Oduor
Saija KiljunenSaija Kiljunen
Saija Kiljunen
EKErmir Kadija
Ermir Kadija
Marianne MureithiMarianne Mureithi
Marianne Mureithi
ANAtunga Nyachieo
Atunga Nyachieo
Mikael SkurnikMikael Skurnik
Mikael Skurnik

23 May 2019 in Archives of Virology
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Journal Article
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EPElsi Pulkkinen
Elsi Pulkkinen
AWAnu Wicklund
Anu Wicklund
JOJoseph Michael Ochieng Oduor
Joseph Michael Ochieng Oduor
Mikael SkurnikMikael Skurnik
Mikael Skurnik
Saija KiljunenSaija Kiljunen
Saija Kiljunen
We present here the isolation and characterization of Acinetobacter pittii phage vB_ApiM_fHyAci03 (fHyAci03), which belongs to the family Myoviridae. The fHyAci03 genome was found to be 165,975 bp in length and predicted to contain 255 genes. While the whole genome was 92.4% identical to Acinetobacter baumannii phage KARL-1, phylogenetic analysis based on phage long distal tail fiber amino acid sequences assigned fHyAci03 and KARL-1 to different subclusters, reflecting their different host species. Together with phylogenetic analysis, genome comparisons indicated that fHyAci03 is a novel member of the subfamily Tevenvirinae. Host range experiments revealed that fHyAci03 could infect two clinical strains of Acinetobacter nosocomialis and six clinical strains of A. pittii. Thus, fHyAci03 is a novel lytic phage that infects clinical Acinetobacter strains and represents a potential new candidate to be used in phage therapy.

1 April 2016 in International Journal of Infectious Diseases
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JOJoseph Michael Ochieng Oduor
Joseph Michael Ochieng Oduor
WOW. Nyamongo Onkoba
W. Nyamongo Onkoba
FMF. Maloba
F. Maloba
WAW. Ouma Arodi
W. Ouma Arodi
ANA. Nyachieo
A. Nyachieo
FOF.I. Onditi
F.I. Onditi