Shuai Zhao

Shuai Zhao

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Shuai Zhao

Department of Information Center, Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100037, China

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 February 2023 in Heliyon
Verified
Journal Article
Open access
SZShuai Zhao
Shuai Zhao
XDXiaolin Diao
Xiaolin Diao
YXYun Xia
Yun Xia
YHYanni Huo
Yanni Huo
MCMeng Cui
Meng Cui
WZWei Zhao
Wei Zhao
Automated ICD coding via machine learning that focuses on some specific diseases has been a hot topic. As one of the leading causes of death, coronary heart diseases (CHD) have seldom been specifically studied by related research, probably due to lack of data concretely targeting at the diseases. Based on Fuwai-CHD and MIMIC-III-CHD, which are a private dataset from Fuwai Hospital and the CHD-related subset of a public dataset named MIMIC-III respectively, this study aimed at automated CHD coding by a deep learning method, which mainly consists of three modules. The first is a B ERT variant module responsible for encoding clinical text. In the module, we fine-tuned BERT variants with masked language model on clinical text, and proposed a truncation method to tackle the problem that BERT variants generally cannot handle sequences containing more than 512 tokens. The second is a word2vec module for encoding code titles and the third is a label-attention module for integrating the embeddings of clinical text and code titles. In short, we named the method BW_att. We compared BW_att against some widely studied baselines, and found that BW_att performed best in most of the coding missions. Specifically, BW_att reached a Macro-F1 of 96.2% and a Macro-AUC of 98.9% for the top-100 most frequent codes in Fuwai-CHD, which covered 89.2% of the total code occurrences. When predicting the top-50 most frequent codes in MIMIC-III-CHD, BW_att reached a Macro-F1 of 40.5% and a Macro-AUC of 66.1%. Moreover, BW_att was capable of locating informative tokens from clinical text for predicting the target codes. In summary, BW_att can not only suggest CHD codes accurately, but also possess robust interpretability, hence has great potential in facilitating CHD coding in practice.

1 January 2021 in Blue-Green Systems
Verified
Journal Article
Open access
PDF file
YZYu Zhang
Yu Zhang
WZWei Zhu
Wei Zhu
RWRuochen Wang
Ruochen Wang
GFGangyu Feng
Gangyu Feng
ZXZongpu Xue
Zongpu Xue
YLYi Lv
Yi Lv
Phosphorus circulation in Taihu Lake has attracted extensive attention, but the contribution of Microcystis to phosphorus circulation in this area is unknown. In this study, the phosphorus concentrations in algal samples collected from the lake in 2015–2016 were determined in the laboratory. From the concentration data, the total quantity of algal phosphorus was calculated and the seasonal variations in algal phosphorus were examined. The results indicated that the intracellular phosphorus content of Microcystis in Taihu varied from 0.044 to 0.130 pg/cell and tended to be high in spring and low in summer. The total amount of algal phosphorus in Taihu Lake ranged between 7.78 and 97.32 t over the study period. Algal phosphorus only accounted for between 1.5 and 18.5% of the phosphorus stock in the water. Because Microcystis accumulated downwind, there was a tendency for the total phosphorus concentrations to be low in the east of the lake and high in the west of the lake. This new information about the spatial and temporal distribution of algal phosphorus contributes to our understanding of how phosphorus in Microcystis contributes to phosphorus circulation in Taihu Lake.