Timothy Dafforn

Timothy Dafforn

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Timothy Dafforn

School of Biosciences, University of Birmingham, Edgbaston, B15 2TT, Birmingham, UK

Research Focus & Metrics

Academic Career Length

30Years (1997-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 May 2009 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
TKTimothy J. Knowles
Timothy J. Knowles
RFRachael Finka
Rachael Finka
CSCorinne Smith
Corinne Smith
YLYu-Pin Lin
Yu-Pin Lin
TDTim Dafforn
Tim Dafforn
MOMichael Overduin
Michael Overduin

1 June 1999 in Cell
Verified
Journal Article
Closed access
DODavid J. Owen
David J. Owen
YVYvonne Vallis
Yvonne Vallis
MNMartin E.M. Noble
Martin E.M. Noble
JHJack B. Hunter
Jack B. Hunter
TDTim R. Dafforn
Tim R. Dafforn
HMHarvey T. McMahon
Harvey T. McMahon

1 April 2015 in Bioscience Reports
Verified
Journal Article
Open access
PDF file
MJMohammed Jamshad
Mohammed Jamshad
JCJack Charlton
Jack Charlton
YLYu-Pin Lin
Yu-Pin Lin
SRSarah J. Routledge
Sarah J. Routledge
ZBZharain Bawa
Zharain Bawa
MWMark Wheatley
Mark Wheatley
G-protein coupled receptors (GPCRs) constitute the largest class of membrane proteins and are a major drug target. A serious obstacle to studying GPCR structure/function characteristics is the requirement to extract the receptors from their native environment in the plasma membrane, coupled with the inherent instability of GPCRs in the detergents required for their solubilization. In the present study, we report the first solubilization and purification of a functional GPCR [human adenosine A2A receptor (A2AR)], in the total absence of detergent at any stage, by exploiting spontaneous encapsulation by styrene maleic acid (SMA) co-polymer direct from the membrane into a nanoscale SMA lipid particle (SMALP). Furthermore, the A2AR–SMALP, generated from yeast (Pichia pastoris) or mammalian cells, exhibited increased thermostability (∼5°C) compared with detergent [DDM (n-dodecyl-β-D-maltopyranoside)]-solubilized A2AR controls. The A2AR–SMALP was also stable when stored for prolonged periods at 4°C and was resistant to multiple freeze-thaw cycles, in marked contrast with the detergent-solubilized receptor. These properties establish the potential for using GPCR–SMALP in receptor-based drug discovery assays. Moreover, in contrast with nanodiscs stabilized by scaffold proteins, the non-proteinaceous nature of the SMA polymer allowed unobscured biophysical characterization of the embedded receptor. Consequently, CD spectroscopy was used to relate changes in secondary structure to loss of ligand binding ([3H]ZM241385) capability. SMALP-solubilization of GPCRs, retaining the annular lipid environment, will enable a wide range of therapeutic targets to be prepared in native-like state to aid drug discovery and understanding of GPCR molecular mechanisms.

23 October 2014 in Nano Research
Verified
Journal Article
Closed access
PDF file
MJMohammed Jamshad
Mohammed Jamshad
VGVinciane Grimard
Vinciane Grimard
IIIlaria Idini
Ilaria Idini
TKTim J. Knowles
Tim J. Knowles
MDMiriam R. Dowle
Miriam R. Dowle
TDTim R. Dafforn
Tim R. Dafforn
In the past few years there has been a growth in the use of nanoparticles for stabilizing lipid membranes that contain embedded proteins. These bionanoparticles provide a solution to the challenging problem of membrane protein isolation by maintaining a lipid bilayer essential to protein integrity and activity. We have previously described the use of an amphipathic polymer (poly(styrene-co-maleic acid), SMA) to produce discoidal nanoparticles with a lipid bilayer core containing the embedded protein. However the structure of the nanoparticle itself has not yet been determined. This leaves a major gap in understanding how the SMA stabilizes the encapsulated bilayer and how the bilayer relates physically and structurally to an unencapsulated lipid bilayer. In this paper we address this issue by describing the structure of the SMA lipid particle (SMALP) using data from small angle neutron scattering (SANS), electron microscopy (EM), attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR), differential scanning calorimetry (DSC) and nuclear magnetic resonance spectroscopy (NMR). We show that the particle is disc shaped containing a polymer “bracelet” encircling the lipid bilayer. The structure and orientation of the individual components within the bilayer and polymer are determined showing that styrene moieties within SMA intercalate between the lipid acyl chains. The dimensions of the encapsulated bilayer are also determined and match those measured for a natural membrane. Taken together, the description of the structure of the SMALP forms the foundation for future development and applications of SMALPs in membrane protein production and analysis.

1 February 2015 in Biochimica et Biophysica Acta (BBA) - Biomembranes
Verified
Journal Article
Open access
Vincent L. G. PostisVincent L. G. Postis
Vincent L. G. Postis
SRShaun Rawson
Shaun Rawson
JMJennifer K. Mitchell
Jennifer K. Mitchell
SLSarah C. Lee
Sarah C. Lee
RPRosemary A. Parslow
Rosemary A. Parslow
Stephen MuenchStephen Muench
Stephen Muench
Despite the great progress recently made in resolving their structures, investigation of the structural biology of membrane proteins still presents major challenges. Even with new technical advances such as lipidic cubic phase crystallisation, obtaining well-ordered crystals remains a significant hurdle in membrane protein X-ray crystallographic studies. As an alternative, electron microscopy has been shown to be capable of resolving >3.5Å resolution detail in membrane proteins of modest (~300 kDa) size, without the need for crystals. However, the conventional use of detergents for either approach presents several issues, including the possible effects on structure of removing the proteins from their natural membrane environment. As an alternative, it has recently been demonstrated that membrane proteins can be effectively isolated, in the absence of detergents, using a styrene maleic acid co-polymer (SMA). This approach yields SMA lipid particles (SMALPs) in which the membrane proteins are surrounded by a small disk of lipid bilayer encircled by polymer. Here we use the Escherichia coli secondary transporter AcrB as a model membrane protein to demonstrate how a SMALP scaffold can be used to visualise membrane proteins, embedded in a near-native lipid environment, by negative stain electron microscopy, yielding structures at a modest resolution in a short (days) timeframe. Moreover, we show that AcrB within a SMALP scaffold is significantly more active than the equivalent DDM stabilised form. The advantages of SMALP scaffolds within electron microscopy are discussed and we conclude that they may prove to be an important tool in studying membrane protein structure and function.

1 January 1999 in Journal of Molecular Biology
Verified
Journal Article
Closed access
ACA.D.M Chapman
A.D.M Chapman
ACA Cortés
A Cortés
TDT.R Dafforn
T.R Dafforn
ACA.R Clarke
A.R Clarke
RBR.L Brady
R.L Brady