Alexis J. Lomakin

Alexis J. Lomakin

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Alexis J. Lomakin

Center for Pathobiochemistry & Genetics, Institute of Medical Chemistry and Pathobiochemistry, Medical University of Vienna, Vienna, Austria

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 October 2020 in Science
Verified
Journal Article
Closed access
ALA. J. Lomakin
A. J. Lomakin
CCC. J. Cattin
C. J. Cattin
DCD. Cuvelier
D. Cuvelier
ZAZ. Alraies
Z. Alraies
MMM. Molina
M. Molina
MPM. Piel
M. Piel
The nucleus makes the rules: Single cells continuously experience and react to mechanical challenges in three-dimensional tissues. Spatial constraints in dense tissues, physical activity, and injury all impose changes in cell shape. How cells can measure shape deformations to ensure correct tissue development and homeostasis remains largely unknown (see the Perspective by Shen and Niethammer). Working independently, Venturini et al. and Lomakin et al. now show that the nucleus can act as an intracellular ruler to measure cellular shape variations. The nuclear envelope provides a gauge of cell deformation and activates a mechanotransduction pathway that controls actomyosin contractility and migration plasticity. The cell nucleus thereby allows cells to adapt their behavior to the local tissue microenvironment. Science , this issue p. eaba2644 , p. eaba2894 ; see also p. 295

28 September 2015 in Nature Cell Biology
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Journal Article
Open access
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ALAlexis J. Lomakin
Alexis J. Lomakin
KLKun-Chun Lee
Kun-Chun Lee
Sangyoon Joshua HanSangyoon Joshua Han
Sangyoon Joshua Han
DBDuyen A. Bui
Duyen A. Bui
MDMichael Davidson
Michael Davidson
GDGaudenz Danuser
Gaudenz Danuser
Symmetry-breaking polarization enables functional plasticity of cells and tissues and is yet not well understood. Here we show that epithelial cells, hard-wired to maintain a static morphology and to preserve tissue organization, can spontaneously switch to a migratory polarized phenotype after relaxation of the actomyosin cytoskeleton. We find that myosin II engages actin in the formation of cortical actomyosin bundles and thus makes it unavailable for deployment in the process of dendritic growth normally driving cell motility. Under low-contractility regimes, epithelial cells polarize in a front–back manner owing to the emergence of actin retrograde flows powered by dendritic polymerization of actin. Coupled to cell movement, the flows transport myosin II from the front to the back of the cell, where the motor locally ‘locks’ actin in contractile bundles. This polarization mechanism could be employed by embryonic and cancer epithelial cells in microenvironments where high-contractility-driven cell motion is inefficient.

1 March 2010 in Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
Verified
Journal Article
Closed access
ENElena S. Nadezhdina
Elena S. Nadezhdina
ALAlexis J. Lomakin
Alexis J. Lomakin
ASAlexey A. Shpilman
Alexey A. Shpilman
ECElena M. Chudinova
Elena M. Chudinova
PIPavel A. Ivanov
Pavel A. Ivanov

1 September 2009 in Developmental Cell
Verified
Journal Article
Closed access
ALAlexis J. Lomakin
Alexis J. Lomakin
ISIrina Semenova
Irina Semenova
IZIlya Zaliapin
Ilya Zaliapin
Pavel KraikivskiPavel Kraikivski
Pavel Kraikivski
ENElena Nadezhdina
Elena Nadezhdina
VRVladimir Rodionov
Vladimir Rodionov

1 June 2021 in Current Opinion in Cell Biology
Verified
Journal Article
Closed access
NSNishit Srivastava
Nishit Srivastava
GNGuilherme Pedreira de Freitas Nader
Guilherme Pedreira de Freitas Nader
AWAlice Williart
Alice Williart
RRRomain Rollin
Romain Rollin
DCDamien Cuvelier
Damien Cuvelier
MPMatthieu Piel
Matthieu Piel

15 April 2021 in Blood
Verified
Journal Article
Open access
PDF file
AKArtem Kalinichenko
Artem Kalinichenko
GCGiovanna Perinetti Casoni
Giovanna Perinetti Casoni
LDLoïc Dupré
Loïc Dupré
LTLuca Trotta
Luca Trotta
JHJakob Huemer
Jakob Huemer
KBKaan Boztug
Kaan Boztug
Exocytosis of cytotoxic granules (CG) by lymphocytes is required for the elimination of infected and malignant cells. Impairments in this process underly a group of diseases with dramatic hyperferritinemic inflammation termed hemophagocytic lymphohistiocytosis (HLH). Although genetic and functional studies of HLH have identified proteins controlling distinct steps of CG exocytosis, the molecular mechanisms that spatiotemporally coordinate CG release remain partially elusive. We studied a patient exhibiting characteristic clinical features of HLH associated with markedly impaired cytotoxic T lymphocyte (CTL) and natural killer (NK) cell exocytosis functions, who beared biallelic deleterious mutations in the gene encoding the small GTPase RhoG. Experimental ablation of RHOG in a model cell line and primary CTLs from healthy individuals uncovered a hitherto unappreciated role of RhoG in retaining CGs in the vicinity of the plasma membrane (PM), a fundamental prerequisite for CG exocytotic release. We discovered that RhoG engages in a protein–protein interaction with Munc13-4, an exocytosis protein essential for CG fusion with the PM. We show that this interaction is critical for docking of Munc13-4+ CGs to the PM and subsequent membrane fusion and release of CG content. Thus, our study illuminates RhoG as a novel essential regulator of human lymphocyte cytotoxicity and provides the molecular pathomechanism behind the identified here and previously unreported genetically determined form of HLH.