Lei Cai

Lei Cai

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Lei Cai

Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations/ Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 October 2020 in PhytoKeys
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Journal Article
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LCLei Cai
Lei Cai
ZHZhang-Jie Huang
Zhang-Jie Huang
FWFang Wen
Fang Wen
ZDZhi-Ling Dao
Zhi-Ling Dao
Two new species of Gesneriaceae, Oreocharis aimodisca and O. longipedicellata, from the limestone area of Yunnan Province, China, are described and illustrated. Their morphological relationship with similar species is discussed and colour photographs, detailed descriptions, distribution and habitat, as well as the IUCN endangered status are provided. We also discuss the accuracy of the scientific names of the described species O. tetrapterus from Guangxi, China in 2019 and O. brachypodus from Guizhou, China, in 2015, and put forward corrections related to name form.

2 January 2024 in GigaScience
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LCLei Cai
Lei Cai
DLDetuan Liu
Detuan Liu
FYFengmao Yang
Fengmao Yang
RZRengang Zhang
Rengang Zhang
QYQuanzheng Yun
Quanzheng Yun
WSWeibang Sun
Weibang Sun
Magnolia sinica (Magnoliaceae) is a highly threatened tree endemic to southeast Yunnan, China. In this study, we generated for the first time a high-quality chromosome-scale genome sequence from M. sinica, by combining Illumina and ONT data with Hi-C scaffolding methods. The final assembled genome size of M. sinica was 1.84 Gb, with a contig N50 of ca. 45 Mb and scaffold N50 of 92 Mb. Identified repeats constituted approximately 57% of the genome, and 43,473 protein-coding genes were predicted. Phylogenetic analysis shows that the magnolias form a sister clade with the eudicots and the order Ceratophyllales, while the monocots are sister to the other core angiosperms. In our study, a total of 21 individuals from the 5 remnant populations of M. sinica, as well as 22 specimens belonging to 8 related Magnoliaceae species, were resequenced. The results showed that M. sinica had higher genetic diversity (θw = 0.01126 and θπ = 0.01158) than other related species in the Magnoliaceae. However, population structure analysis suggested that the genetic differentiation among the 5 M. sinica populations was very low. Analyses of the demographic history of the species using different models consistently revealed that 2 bottleneck events occurred. The contemporary effective population size of M. sinica was estimated to be 10.9. The different patterns of genetic loads (inbreeding and numbers of deleterious mutations) suggested constructive strategies for the conservation of these 5 different populations of M. sinica. Overall, this high-quality genome will be a valuable genomic resource for conservation of M. sinica.

16 April 2021 in PhytoKeys
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Journal Article
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RLRong-Li Liao
Rong-Li Liao
LCLei Cai
Lei Cai
ZYZhi-Yong Yu
Zhi-Yong Yu
YWYue-Hua Wang
Yue-Hua Wang
WSWeibang Sun
Weibang Sun
Impatiens wutaishanensis R.L. Liao & Lei Cai, a new species from Southeast Yunnan, China, is here described and illustrated. This new species is most similar to Impatiens parvisepala S.X. Yu & Y.T. Hou in its racemose inflorescences, its four lateral sepals, the leaf arrangement, and in having yellow flowers. However, it differs in the height of the plants, the length of the petiole, the size and shape of the leaf blade, the shape of the spur, and the number of flowers in each inflorescence. A detailed description, color photographs, and a provisional IUCN red list assessment are provided, and its geographical distribution, ecology, and morphological relationship with relevant similar species are discussed.

14 February 2025 in PhytoKeys
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TSTian Shuai
Tian Shuai
HLHong-Qiang Lin
Hong-Qiang Lin
LCLei Cai
Lei Cai
YCYu-Fan Chen
Yu-Fan Chen
ZWZhikun Wu
Zhikun Wu
Primula yanbianensis T.Shuai, Lei Cai & Z.K.Wu, a new species of Primulaceae from Sichuan, China, is described and illustrated. Morphological evidence supports P. yanbianensis as a member of P. sect. Cortusoides, which is characterised by lack of farina, generally well furnished with multicellular hairs, subrounded leaf blades are more or less lobed, with distinct petiole and a deeply cordate base and campanulate or narrowly campanulate calyx not accrescent after anthesis. The new species is characterised by having umbel in whorls of 1–2, scape usually lower than leaf clusters, bracts broadly ovate and rose to pink petals distinctly veined. The distribution, morphological comparison with closely-related species and conservation status of the new species are also provided.

22 March 2022 in PhytoKeys
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Journal Article
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FWFang Wen
Fang Wen
ZXZi-Bing Xin
Zi-Bing Xin
XHXin Hong
Xin Hong
LCLei Cai
Lei Cai
XCXiao-Yun Chen
Xiao-Yun Chen
LFLong-Fei Fu
Long-Fei Fu
Actinostephanus, a new genus from southern China, is described and colorfully illustrated with a single species, A. enpingensis. This new genus is morphologically most similar to Boeica and Leptoboea, nevertheless, it can be easily distinguished from the latter two by the following characteristics, such as leaves in whorls of three, all closely clustered at the top; corolla bowl-shaped, 5-lobed, actinomorphic; capsule hard, oblong-ovoid, short, 3–4 mm long, densely appressed villous, wrapped by persistent densely pubescent calyx lobes, style persistent. The new genus and related genera were sequenced using the next-generation sequencing technique. The whole plastid genome of the new genus is 154, 315 – 154, 344 bp in length. We reconstructed phylogenetic trees using the dataset of 80 encoded protein genes of the whole plastid genome from 47 accessions based on ML and BI analyses. The result revealed that the new genus was recovering in a polytomy including Boeica, Rhynchotechum, and Leptoboea with strong support, congruent to the morphological evidence. A global conservation assessment was also performed and classifies A. enpingensis as Least Concern (LC). In addition, after a review of recently described species of Gesneriaceae, we propose that plant enthusiasts, especially Gesneriad fans, have been playing an increasingly important role in the process of new taxa-discoveries.

5 December 2023 in Diversity
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TATemur Asatulloev
Temur Asatulloev
DDDavron Burkhonovich Dekhkonov
Davron Burkhonovich Dekhkonov
ZYZiyoviddin Yusupov
Ziyoviddin Yusupov
UTUmida Tojiboeva
Umida Tojiboeva
LCLei Cai
Lei Cai
WSWeibang Sun
Weibang Sun
Tulipa L. (Liliaceae) comprises approximately 150 species. Although Central Asia, the main center of its diversity, includes around 66 species, detailed mapping of their distribution is limited and research on their ecoregional and phytogeographical dispersion is insufficient. This study aimed to map and analyze the distribution patterns of Tulipa across the Central Asian ecoregions and phytogeographical regions to identify potential hotspots for effective conservation efforts. The results identified the Gissaro-Alai open woodlands ecoregion, which hosts 41 species of Tulipa, as the leading hotspot ecoregion. The Ferghana Valley phytogeographical district (Afghano-Turkestan province) was found to be the most suitable habitat for 25 species of Tulipa. We also determined that altitude has a strong influence on the diversity of Tulipa and indicating increase of species richness as elevation rises. However, as elevation rises up from ca. 2000 m a.s.l. species richness also decreases slightly. An analysis of the distribution of sections of Tulipa in Central Asia revealed that around 61% of all species dwell in this area and that the sections Kolpakowskianae and Biflores, which have their greatest diversity of species, are specific to this area. The findings provide valuable insights into the distribution of Tulipa and allow for feasible recommendations and suggestions for their conservation.