28 October 2019 in IEEE Journal of Biomedical and Health Informatics
Liver cancer is a leading cause of cancer deaths worldwide due to its high morbidity and mortality. Histopathological image analysis (HIA) is a crucial step in the early diagnosis of liver cancer and is routinely performed manually. However, this process is time-consuming, error-prone, and easily affected by the expertise of pathologists. Recently, computer-aided methods have been widely applied to medical image analysis; however, the current medical image analysis studies have not yet focused on the histopathological morphology of liver cancer due to its complex features and the insufficiency of training images with detailed annotations. This paper proposes a deep learning method for liver cancer histopathological image classification using only global labels. To compensate for the lack of detailed cancer region annotations in those images, patch features are extracted and fully utilized. Transfer learning is used to obtain the patch-level features and then combined with multiple-instance learning to acquire the image-level features for classification. The method proposed here solves the processing of large-scale images and training sample insufficiency in liver cancer histopathological images for image classification. The proposed method can distinguish and classify liver histopathological images as abnormal or normal with high accuracy, thus providing support for the early diagnosis of liver cancer.
4 June 2021 in IEEE Transactions on Multimedia
The large data volume of point clouds poses severe challenges for efficient storage and transmission in recent years. In this paper, we propose the first -- to our best knowledge -- end-to-end deep framework for compressing point cloud attributes. Specifically, we propose a point cloud lossy attribute autoencoder, which directly encodes and decodes point cloud attributes with the help of geometry, instead of voxelizing or projecting the points. In the autoencoder, we propose a second-order point convolution that utilizes the spatial correlations between more points and the nonlinear relationship between attribute features. We introduce a dense point-inception block, which derives from a combination of an inception-style block and a dense block, to improve feature propagation. In addition, we devise a multiscale loss to guide the autoencoder in focusing attention on the coarse-grained points with better coverage of the entire point cloud, which makes it easier for the autoencoder to obtain better optimization of the qualities of all points. Experimental results show that our proposed framework still has a performance gap compared with the state-of-the-art algorithms in the MPEG G-PCC reference software TMC13. However, it does outperform the RAHT-RLGR, which is one of the core transforms used in TMC13 without many well-designed techniques that make TMC13 what it is today. It outperforms RAHT-RLGR by 2.63 dB, 1.77 dB, and 3.40 dB on average in terms of the BD-PSNR for the Y, U, and V components. A subjective quality comparison demonstrates that our framework can preserve more textures and reduce blocking and color noise artifacts.
7 June 2019 in IEEE Transactions on Pattern Analysis and Machine Intelligence
We propose a Deep Boosting Framework (DBF) for real-world image denoising by integrating the deep learning technique into the boosting algorithm. The DBF replaces conventional handcrafted boosting units by elaborate convolutional neural networks, which brings notable advantages in terms of both performance and speed. We design a lightweight Dense Dilated Fusion Network (DDFN) as an embodiment of the boosting unit, which addresses the vanishing of gradients during training due to the cascading of networks while promoting the efficiency of limited parameters. The capabilities of the proposed method are first validated on several representative simulation tasks including non-blind and blind Gaussian denoising and JPEG image deblocking. We then focus on a practical scenario to tackle with the complex and challenging real-world noise. To facilitate leaning-based methods including ours, we build a new Real-world Image Denoising (RID) dataset, which contains 200 pairs of high-resolution images with diverse scene content under various shooting conditions. Moreover, we conduct comprehensive analysis on the domain shift issue for real-world denoising and propose an effective one-shot domain transfer scheme to address this issue. Comprehensive experiments on widely used benchmarks demonstrate that the proposed method significantly surpasses existing methods on the task of real-world image denoising.
13 September 2024 in IEEE Transactions on Image Processing
Existing methods have demonstrated effective performance on a single degradation type. In practical applications, however, the degradation is often unknown, and the mismatch between the model and the degradation will result in a severe performance drop. In this paper, we propose an all-in-one image restoration network that tackles multiple degradations. Due to the heterogeneous nature of different types of degradations, it is difficult to process multiple degradations in a single network. To this end, we propose to learn a neural degradation representation (NDR) that captures the underlying characteristics of various degradations. The learned NDR adaptively decomposes different types of degradations, similar to a neural dictionary that represents basic degradation components. Subsequently, we develop a degradation query module and a degradation injection module to effectively approximate and utilize the specific degradation based on NDR, enabling the all-in-one restoration ability for multiple degradations. Moreover, we propose a bidirectional optimization strategy to effectively drive NDR to learn the degradation representation by optimizing the degradation and restoration processes alternately. Comprehensive experiments on representative types of degradations (including noise, haze, rain, and downsampling) demonstrate the effectiveness and generalizability of our method. Code is available at https://github.com/mdyao/NDR-Restore.
18 May 2022 in IEEE Transactions on Medical Imaging
Emerging deep learning-based methods have enabled great progress in automatic neuron segmentation from Electron Microscopy (EM) volumes. However, the success of existing methods is heavily reliant upon a large number of annotations that are often expensive and time-consuming to collect due to dense distributions and complex structures of neurons. If the required quantity of manual annotations for learning cannot be reached, these methods turn out to be fragile. To address this issue, in this article, we propose a two-stage, semi-supervised learning method for neuron segmentation to fully extract useful information from unlabeled data. First, we devise a proxy task to enable network pre-training by reconstructing original volumes from their perturbed counterparts. This pre-training strategy implicitly extracts meaningful information on neuron structures from unlabeled data to facilitate the next stage of learning. Second, we regularize the supervised learning process with the pixel-level prediction consistencies between unlabeled samples and their perturbed counterparts. This improves the generalizability of the learned model to adapt diverse data distributions in EM volumes, especially when the number of labels is limited. Extensive experiments on representative EM datasets demonstrate the superior performance of our reinforced consistency learning compared to supervised learning, i.e., up to 400% gain on the VOI metric with only a few available labels. This is on par with a model trained on ten times the amount of labeled data in a supervised manner. Code is available at https://github.com/weih527/SSNS-Net.