Dongjin Lee

Dongjin Lee

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Dongjin Lee

Department of Computational Biology and the Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY, USA

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 June 2023 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
KHKai Hu
Kai Hu
XZXiang Zhang
Xiang Zhang
DLDongjin Lee
Dongjin Lee
DXDapeng Xiong
Dapeng Xiong
YZYuan Zhang
Yuan Zhang
XGXieping Gao
Xieping Gao
Breast ultrasound (BUS) image segmentation is a critical procedure in the diagnosis and quantitative analysis of breast cancer. Most existing methods for BUS image segmentation do not effectively utilize the prior information extracted from the images. In addition, breast tumors have very blurred boundaries, various sizes and irregular shapes, and the images have a lot of noise. Thus, tumor segmentation remains a challenge. In this paper, we propose a BUS image segmentation method using a boundary-guided and region-aware network with global scale-adaptive (BGRA-GSA). Specifically, we first design a global scale-adaptive module (GSAM) to extract features of tumors of different sizes from multiple perspectives. GSAM encodes the features at the top of the network in both channel and spatial dimensions, which can effectively extract multi-scale context and provide global prior information. Moreover, we develop a boundary-guided module (BGM) for fully mining boundary information. BGM guides the decoder to learn the boundary context by explicitly enhancing the extracted boundary features. Simultaneously, we design a region-aware module (RAM) for realizing the cross-fusion of diverse layers of breast tumor diversity features, which can facilitate the network to improve the learning ability of contextual features of tumor regions. These modules enable our BGRA-GSA to capture and integrate rich global multi-scale context, multi-level fine-grained details, and semantic information to facilitate accurate breast tumor segmentation. Finally, the experimental results on three publicly available datasets show that our model achieves highly effective segmentation of breast tumors even with blurred boundaries, various sizes and shapes, and low contrast.

1 August 2019 in Heliyon
Verified
Journal Article
Open access
Kangwon SeoKangwon Seo
Kangwon Seo
RPRong Pan
Rong Pan
DLDongjin Lee
Dongjin Lee
PTPradeep Thiyyagura
Pradeep Thiyyagura
KCKewei Chen
Kewei Chen
While tomographic neuroimaging data is information rich, objective, and with high sensitivity in the study of brain diseases such as Alzheimer's disease (AD), its direct use in clinical practice and in regulated clinical trial (CT) still has many challenges. Taking CT as an example, unless the relevant policy and the perception of the primary outcome measures change, the need to construct univariate indices (out of the 3-D imaging data) to serve as CT's primary outcome measures will remain the focus of active research. More relevant to this current study, an overall global index that summarizes multiple complicated features from neuroimages should be developed in order to provide high diagnostic accuracy and sensitivity in tracking AD progression over time in clinical setting. Such index should also be practically intuitive and logically explainable to patients and their families. In this research, we propose a new visualization tool, derived from the manifold-based nonlinear dimension reduction of brain MRI features, to track AD progression over time. In specific, we investigate the locally linear embedding (LLE) method using a dataset from Alzheimer's Disease Neuroimaging Initiative (ADNI), which includes the longitudinal MRIs from 562 subjects. About 20% of them progressed to the next stage of dementia. Using only the baseline data of cognitively unimpaired (CU) and AD subjects, LLE reduces the feature dimension to two and a subject's AD progression path can be plotted in this low dimensional LLE feature space. In addition, the likelihood of being categorized to AD is indicated by color. This LLE map is a new data visualization tool that can assist in tracking AD progression over time.

1 September 2015 in International Journal of Distributed Sensor Networks
Verified
Journal Article
Open access
DLDongjin Lee
Dongjin Lee
JSJunho Shim
Junho Shim
Subspace clustering, which detects all clusters in affine subspaces of a given high dimensional vector space, is used in various applications, including e-business. The performance and result of a subspace clustering algorithm highly depend on the parameter values the algorithm is tuned to execute. It may not be clear if the resultant clusters are indeed meaningful ones in a given dataset or if the result is just an artifact of the given parameter values. Although choosing the proper parameter values is crucial for both clustering quality and performance of the algorithm, there has been little research or discussion on this topic. In this paper, we propose a methodology for determining proper values of parameters in subspace clustering. Along with it, we validate our approach through experimental analysis, using various real-world datasets. The study can serve as a reference model for any subspace clustering experiment in which parameter setting is required to output clusters of quality.