Daniel Aagren Nielsen

Daniel Aagren Nielsen

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Daniel Aagren Nielsen

School of Life Sciences University of Technology Sydney 15 Broadway Ultimo NSW 2007 Australia

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 April 2017 in Frontiers in Ecology and the Environment
Verified
Journal Article
Open access
PDF file
PMPeter Macreadie
Peter Macreadie
DNDaniel A Nielsen
Daniel A Nielsen
JKJeffrey J Kelleway
Jeffrey J Kelleway
TATrisha B Atwood
Trisha B Atwood
JSJustin Seymour
Justin Seymour
PRPeter J Ralph
Peter J Ralph
To promote the sequestration of blue carbon, resource managers rely on best‐management practices that have historically included protecting and restoring vegetated coastal habitats (seagrasses, tidal marshes, and mangroves), but are now beginning to incorporate catchment‐level approaches. Drawing upon knowledge from a broad range of environmental variables that influence blue carbon sequestration, including warming, carbon dioxide levels, water depth, nutrients, runoff, bioturbation, physical disturbances, and tidal exchange, we discuss three potential management strategies that hold promise for optimizing coastal blue carbon sequestration: (1) reducing anthropogenic nutrient inputs, (2) reinstating top‐down control of bioturbator populations, and (3) restoring hydrology. By means of case studies, we explore how these three strategies can minimize blue carbon losses and maximize gains. A key research priority is to more accurately quantify the impacts of these strategies on atmospheric greenhouse‐gas emissions in different settings at landscape scales.

20 February 2018 in The ISME Journal
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Journal Article
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DNDaniel Aagren Nielsen
Daniel Aagren Nielsen
KPKatherina Petrou
Katherina Petrou
RGRuth D. Gates
Ruth D. Gates
Ocean warming is resulting in increased occurrence of mass coral bleaching; a response in which the intracellular algal endosymbionts (Symbiodinium sp.) are expelled from the coral host due to physiological stress. This detrimental process is often attributed to overproduction of reactive oxygen species (ROS) that leak out of the endosymbionts and causes damage to the host cell, though direct evidence validating this link is limited. Here, for the first time, we used confocal microscopy and fluorescent dyes to investigate if endosymbiont ROS production significantly and predictably affects physiological parameters in its host cell. Heat treatment resulted in a 60% reduction in coral symbiont density, a ~70% increase in median endosymbiont ROS and a small reduction in photosystem efficiency (FV/FM, 11%), indicating absence of severe light stress. Notably, no other physiological parameters were affected in either endosymbionts or host cells, including reduced glutathione and ROS-induced lipid peroxidation. Taken together, the increase in endosymbiont ROS could not be linked to physiological damage in either partner, suggesting that oxidative stress is unlikely to have been the driver for symbiont expulsion in this study.

12 July 2012 in Analytical Chemistry
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Journal Article
Open access
TJTijana Jokic
Tijana Jokic
SBSergey M. Borisov
Sergey M. Borisov
RSRobert Saf
Robert Saf
DNDaniel A. Nielsen
Daniel A. Nielsen
MKMichael Kühl
Michael Kühl
IKIngo Klimant
Ingo Klimant
In this study, a series of new BF2-chelated tetraarylazadipyrromethane dyes are synthesized and are shown to be suitable for the preparation of on/off photoinduced electron transfer modulated fluorescent sensors. The new indicators are noncovalently entrapped in polyurethane hydrogel D4 and feature absorption maxima in the range 660–710 nm and fluorescence emission maxima at 680–740 nm. Indicators have high molar absorption coefficients of ∼80 000 M–1 cm–1, good quantum yields (up to 20%), excellent photostability and low cross-sensitivity to the ionic strength. pKa values of indicators are determined from absorbance and fluorescence measurements and range from 7 to 11, depending on the substitution pattern of electron-donating and -withdrawing functionalities. Therefore, the new indicators are suitable for exploitation and adaptation in a diverse range of analytical applications. Apparent pKa values in sensor films derived from fluorescence data show 0.5–1 pH units lower values in comparison with those derived from the absorption data due to Förster resonance energy transfer from protonated to deprotonated form. A dual-lifetime referenced sensor is prepared, and application for monitoring of pH in corals is demonstrated.

5 June 2020 in Scientific Data
Verified
Journal Article
Open access
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JMJoshua S Madin
Joshua S Madin
DNDaniel A. Nielsen
Daniel A. Nielsen
MBMaria Brbic
Maria Brbic
RCRoss Corkrey
Ross Corkrey
DDDavid Danko
David Danko
MWMark Westoby
Mark Westoby
A synthesis of phenotypic and quantitative genomic traits is provided for bacteria and archaea, in the form of a scripted, reproducible workflow that standardizes and merges 26 sources. The resulting unified dataset covers 14 phenotypic traits, 5 quantitative genomic traits, and 4 environmental characteristics for approximately 170,000 strain-level and 15,000 species-aggregated records. It spans all habitats including soils, marine and fresh waters and sediments, host-associated and thermal. Trait data can find use in clarifying major dimensions of ecological strategy variation across species. They can also be used in conjunction with species and abundance sampling to characterize trait mixtures in communities and responses of traits along environmental gradients.

26 August 2019 in Nature Climate Change
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Journal Article
Closed access
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KPKatherina Petrou
Katherina Petrou
KBKirralee G. Baker
Kirralee G. Baker
DNDaniel A. Nielsen
Daniel A. Nielsen
AHAlyce M. Hancock
Alyce M. Hancock
KSKai G. Schulz
Kai G. Schulz
ADAndrew T. Davidson
Andrew T. Davidson

3 November 2014 in New Phytologist
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Journal Article
Closed access
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KBKasper Elgetti Brodersen
Kasper Elgetti Brodersen
DNDaniel Aagren Nielsen
Daniel Aagren Nielsen
PRPeter J. Ralph
Peter J. Ralph
MKMichael Kühl
Michael Kühl