Joshua S Madin

Dr. Joshua S Madin

orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 April 2019 in Nature
Verified
Journal Article
Closed access
PDF file
THTerry Hughes
Terry Hughes
JKJames T. Kerry
James T. Kerry
ABAndrew H. Baird
Andrew H. Baird
SCSean R. Connolly
Sean R. Connolly
TCTory J. Chase
Tory J. Chase
RWRachael M. Woods
Rachael M. Woods

24 July 2018 in Global Ecology and Biogeography
Verified
Journal Article
Open access
PDF file
MDMaria Dornelas
Maria Dornelas
LALaura H. Antão
Laura H. Antão
FMFaye Moyes
Faye Moyes
ABAmanda E. Bates
Amanda E. Bates
AMAnne Magurran
Anne Magurran
Michael Lothar ZettlerMichael Lothar Zettler
Michael Lothar Zettler
Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2(158 cm2) to 100 km2(1,000,000,000,000 cm2).Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.Software format: .csv and .SQL.

1 November 2006 in Nature
Verified
Journal Article
Closed access
JMJoshua S Madin
Joshua S Madin
SCSean Connolly
Sean Connolly

29 March 2016 in Scientific Data
Verified
Journal Article
Open access
JMJoshua S Madin
Joshua S Madin
KAKristen D. Anderson
Kristen D. Anderson
MAMagnus Heide Andreasen
Magnus Heide Andreasen
TBTom Bridge
Tom Bridge
SCStephen D. Cairns
Stephen D. Cairns
ABAndrew Baird
Andrew Baird
Trait-based approaches advance ecological and evolutionary research because traits provide a strong link to an organism’s function and fitness. Trait-based research might lead to a deeper understanding of the functions of, and services provided by, ecosystems, thereby improving management, which is vital in the current era of rapid environmental change. Coral reef scientists have long collected trait data for corals; however, these are difficult to access and often under-utilized in addressing large-scale questions. We present the Coral Trait Database initiative that aims to bring together physiological, morphological, ecological, phylogenetic and biogeographic trait information into a single repository. The database houses species- and individual-level data from published field and experimental studies alongside contextual data that provide important framing for analyses. In this data descriptor, we release data for 56 traits for 1547 species, and present a collaborative platform on which other trait data are being actively federated. Our overall goal is for the Coral Trait Database to become an open-source, community-led data clearinghouse that accelerates coral reef research.

1 October 2007 in Ecological Informatics
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Journal Article
Closed access
JMJoshua S Madin
Joshua S Madin
SBShawn Bowers
Shawn Bowers
MSMark Schildhauer
Mark Schildhauer
SKSergeui Krivov
Sergeui Krivov
DPDeana Pennington
Deana Pennington
FVFerdinando Villa
Ferdinando Villa

14 September 2011 in Proceedings Of The Royal Society B-Biological Sciences
Verified
Journal Article
Closed access
OLOsmar J. Luiz
Osmar J. Luiz
JMJoshua S Madin
Joshua S Madin
DRD. Ross Robertson
D. Ross Robertson
LRLuiz A. Rocha
Luiz A. Rocha
PWPeter Wirtz
Peter Wirtz
SFSergio R. Floeter
Sergio R. Floeter
How do biogeographically different provinces arise in response to oceanic barriers to dispersal? Here, we analyse how traits related to the pelagic dispersal and adult biology of 985 tropical reef fish species correlate with their establishing populations on both sides of two Atlantic marine barriers: the Mid-Atlantic Barrier (MAB) and the Amazon–Orinoco Plume (AOP). Generalized linear mixed-effects models indicate that predictors for successful barrier crossing are the ability to raft with flotsam for the deep-water MAB, non-reef habitat usage for the freshwater and sediment-rich AOP, and large adult-size and large latitudinal-range for both barriers. Variation in larval-development mode, often thought to be broadly related to larval-dispersal potential, is not a significant predictor in either case. Many more species of greater taxonomic diversity cross the AOP than the MAB. Rafters readily cross both barriers but represent a much smaller proportion of AOP crossers than MAB crossers. Successful establishment after crossing both barriers may be facilitated by broad environmental tolerance associated with large body size and wide latitudinal-range. These results highlight the need to look beyond larval-dispersal potential and assess adult-biology traits when assessing determinants of successful movements across marine barriers.