Scott Thomas Allen

Scott Thomas Allen

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Scott Thomas Allen

Department of Natural Resources and Environmental Science University of Nevada Reno NV USA

Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 July 2019 in Reviews of Geophysics
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Matthias SprengerMatthias Sprenger
Matthias Sprenger
CSChristine Stumpp
Christine Stumpp
MWMarkus Weiler
Markus Weiler
WAWerner Aeschbach
Werner Aeschbach
SAScott T. Allen
Scott T. Allen
CWChristiane Werner
Christiane Werner
The time that water takes to travel through the terrestrial hydrological cycle and the critical zone is of great interest in Earth system sciences with broad implications for water quality and quantity. Most water age studies to date have focused on individual compartments (or subdisciplines) of the hydrological cycle such as the unsaturated or saturated zone, vegetation, atmosphere, or rivers. However, recent studies have shown that processes at the interfaces between the hydrological compartments (e.g., soil‐atmosphere or soil‐groundwater) govern the age distribution of the water fluxes between these compartments and thus can greatly affect water travel times. The broad variation from complete to nearly absent mixing of water at these interfaces affects the water ages in the compartments. This is especially the case for the highly heterogeneous critical zone between the top of the vegetation and the bottom of the groundwater storage. Here, we review a wide variety of studies about water ages in the critical zone and provide (1) an overview of new prospects and challenges in the use of hydrological tracers to study water ages, (2) a discussion of the limiting assumptions linked to our lack of process understanding and methodological transfer of water age estimations to individual disciplines or compartments, and (3) a vision for how to improve future interdisciplinary efforts to better understand the feedbacks between the atmosphere, vegetation, soil, groundwater, and surface water that control water ages in the critical zone.

1 March 2019 in Hydrology and Earth System Sciences
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SAScott T. Allen
Scott T. Allen
JKJames W. Kirchner
James W. Kirchner
SBSabine Braun
Sabine Braun
RSRolf Siegwolf
Rolf Siegwolf
GGGregory R. Goldsmith
Gregory R. Goldsmith
Rain recharges soil water storages and either percolates downward into aquifers and streams or is returned to the atmosphere through evapotranspiration. Although it is commonly assumed that summer rainfall recharges plant-available water during the growing season, the seasonal origins of water used by plants have not been systematically explored. We characterize the seasonal origins of waters in soils and trees by comparing their midsummer isotopic signatures (δ2H) to seasonal isotopic cycles in precipitation, using a new seasonal origin index. Across 182 Swiss forest sites, xylem water isotopic signatures show that summer rain was not the predominant water source for midsummer transpiration in any of the three sampled tree species. Beech and oak mostly used winter precipitation, whereas spruce used water of more diverse seasonal origins. Even in the same plots, beech consistently used more winter precipitation than spruce, demonstrating consistent niche partitioning in the rhizosphere. All three species' xylem water isotopes indicate that trees used more winter precipitation in drier regions, potentially mitigating their vulnerability to summer droughts. The widespread occurrence of winter isotopic signatures in midsummer xylem implies that growing-season rainfall may have minimally recharged the soil water storages that supply tree growth, even across diverse humid climates (690–2068 mm annual precipitation). These results challenge common assumptions concerning how water flows through soils and is accessed by trees. Beyond these ecological and hydrological implications, our findings also imply that stable isotopes of δ18O and δ2H in plant tissues, which are often used in climate reconstructions, may not reflect water from growing-season climates.

30 October 2018 in Biogeosciences
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DPDaniele Penna
Daniele Penna
LHLuisa Hopp
Luisa Hopp
Francesca ScandellariFrancesca Scandellari
Francesca Scandellari
SAScott T. Allen
Scott T. Allen
PBPaolo Benettin
Paolo Benettin
JKJames W. Kirchner
James W. Kirchner
In this commentary, we summarize and build upon discussions that emerged during the workshop “Isotope-based studies of water partitioning and plant–soil interactions in forested and agricultural environments” held in San Casciano in Val di Pesa, Italy, in September 2017. Quantifying and understanding how water cycles through the Earth's critical zone is important to provide society and policymakers with the scientific background to manage water resources sustainably, especially considering the ever-increasing worldwide concern about water scarcity. Stable isotopes of hydrogen and oxygen in water have proven to be a powerful tool for tracking water fluxes in the critical zone. However, both mechanistic complexities (e.g. mixing and fractionation processes, heterogeneity of natural systems) and methodological issues (e.g. lack of standard protocols to sample specific compartments, such as soil water and xylem water) limit the application of stable water isotopes in critical-zone science. In this commentary, we examine some of the opportunities and critical challenges of isotope-based ecohydrological applications and outline new perspectives focused on interdisciplinary research opportunities for this important tool in water and environmental science.

14 June 2021 in Earth System Science Data
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RPRafael Poyatos
Rafael Poyatos
VGVíctor Granda
Víctor Granda
VFVíctor Flo
Víctor Flo
MAMark A. Adams
Mark A. Adams
BABalázs Adorján
Balázs Adorján
JMJordi Martínez-Vilalta
Jordi Martínez-Vilalta
Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN.

19 July 2018 in Hydrology and Earth System Sciences
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JFJana von Freyberg
Jana von Freyberg
SAScott T. Allen
Scott T. Allen
SSStefan Seeger
Stefan Seeger
MWMarkus Weiler
Markus Weiler
JKJames W. Kirchner
James W. Kirchner
The young water fraction Fyw, defined as the proportion of catchment outflow younger than approximately 2–3 months, can be estimated directly from the amplitudes of seasonal cycles of stable water isotopes in precipitation and streamflow. Thus, Fyw may be a useful metric in catchment inter-comparison studies that investigate landscape and hydro-climatic controls on streamflow generation. Here, we explore how Fyw varies with catchment characteristics and climatic forcing, using an extensive isotope data set from 22 small- to medium-sized (0.7–351 km2) Swiss catchments. We find that flow-weighting the tracer concentrations in streamwater resulted in roughly 26 % larger young water fractions compared to the corresponding unweighted values, reflecting the fact that young water fractions tend to be larger when catchments are wet and discharge is correspondingly higher. However, flow-weighted and unweighted young water fractions are strongly correlated with each other among the catchments. They also correlate with terrain, soil, and land-use indices, as well as with mean precipitation and measures of hydrologic response. Within individual catchments, young water fractions increase with discharge, indicating an increase in the proportional contribution of faster flow paths at higher flows. We present a new method to quantify the discharge sensitivity of Fyw, which we estimate as the linear slope of the relationship between the young water fraction and flow. Among the 22 catchments, discharge sensitivities of Fyw are highly variable and only weakly correlated with Fyw itself, implying that these two measures reflect catchment behaviour differently. Based on strong correlations between the discharge sensitivity of Fyw and several catchment characteristics, we suggest that low discharge sensitivities imply greater persistence in the proportions of fast and slow runoff flow paths as catchment wetness changes. In contrast, high discharge sensitivities imply the activation of different dominant flow paths during precipitation events, such as when subsurface water tables rise into more permeable layers and/or the river network expands further into the landscape.

29 November 2022 in Geophysical Research Letters
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Journal Article
Open access
WBWouter R. Berghuijs
Wouter R. Berghuijs
ELElco Luijendijk
Elco Luijendijk
Christian  MoeckChristian Moeck
Christian Moeck
YVYpe van der Velde
Ype van der Velde
SAScott T. Allen
Scott T. Allen
Groundwater is an invaluable global resource, but its long‐term viability as a resource for consumption, agriculture, and ecosystems depends on precipitation recharging aquifers. How much precipitation recharges groundwaters varies enormously across Earth's surface, yet recharge rates often remain uncertain. Here we use a global synthesis of field‐estimated recharge across six continents to show that globally recharge first‐order follows a simple function of climatic aridity. We use this relationship to estimate long‐term recharge in energy‐limited systems outside of permafrost regions. Our aridity‐based recharge estimates are consistent with the global field data but, on average, double previous estimates of global models. Our higher recharge estimates are likely caused by preferential groundwater recharge and discharge occurring at grid scales finer than global models. The higher recharge estimates suggest that more groundwater contributes to evapotranspiration and streamflow than previously represented by global hydrological models and global water cycle diagrams.