Amanda Warner

Ms. Amanda Warner

The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 April 2022 in Cells
Verified
Journal Article
Open access
PDF file
RBRakhee Bajaj
Rakhee Bajaj
AWAmanda Warner
Amanda Warner
JFJared Joseph-Alan Fradette
Jared Joseph-Alan Fradette
DGDon L. Gibbons
Don L. Gibbons
The Golgi apparatus is at the center of protein processing and trafficking in normal cells. Under pathological conditions, such as in cancer, aberrant Golgi dynamics alter the tumor microenvironment and the immune landscape, which enhances the invasive and metastatic potential of cancer cells. Among these changes in the Golgi in cancer include altered Golgi orientation and morphology that contribute to atypical Golgi function in protein trafficking, post-translational modification, and exocytosis. Golgi-associated gene mutations are ubiquitous across most cancers and are responsible for modifying Golgi function to become pro-metastatic. The pharmacological targeting of the Golgi or its associated genes has been difficult in the clinic; thus, studying the Golgi and its role in cancer is critical to developing novel therapeutic agents that limit cancer progression and metastasis. In this review, we aim to discuss how disrupted Golgi function in cancer cells promotes invasion and metastasis.

31 January 2023 in Cancer Research
Verified
Journal Article
Open access
PDF file
EFErika Y. Faraoni
Erika Y. Faraoni
KSKanchan Singh
Kanchan Singh
VCVidhi Chandra
Vidhi Chandra
OROlivereen Le Roux
Olivereen Le Roux
YDYulin Dai
Yulin Dai
JBJennifer M. Bailey-Lundberg
Jennifer M. Bailey-Lundberg
The microenvironment that surrounds pancreatic ductal adenocarcinoma (PDAC) is profoundly desmoplastic and immunosuppressive. Understanding triggers of immunosuppression during the process of pancreatic tumorigenesis would aid in establishing targets for effective prevention and therapy. Here, we interrogated differential molecular mechanisms dependent on cell of origin and subtype that promote immunosuppression during PDAC initiation and in established tumors. Transcriptomic analysis of cell-of-origin–dependent epithelial gene signatures revealed that Nt5e/CD73, a cell-surface enzyme required for extracellular adenosine generation, is one of the top 10% of genes overexpressed in murine tumors arising from the ductal pancreatic epithelium as opposed to those rising from acinar cells. These findings were confirmed by IHC and high-performance liquid chromatography. Analysis in human PDAC subtypes indicated that high Nt5e in murine ductal PDAC models overlaps with high NT5E in human PDAC squamous and basal subtypes, considered to have the highest immunosuppression and worst prognosis. Multiplex immunofluorescent analysis showed that activated CD8+ T cells in the PDAC tumor microenvironment express high levels of CD73, indicating an opportunity for immunotherapeutic targeting. Delivery of CD73 small-molecule inhibitors through various delivery routes reduced tumor development and growth in genetically engineered and syngeneic mouse models. In addition, the adenosine receptor Adora2b was a determinant of adenosine-mediated immunosuppression in PDAC. These findings highlight a molecular trigger of the immunosuppressive PDAC microenvironment elevated in the ductal cell of origin, linking biology with subtype classification, critical components for PDAC immunoprevention and personalized approaches for immunotherapeutic intervention. Significance: Ductal-derived pancreatic tumors have elevated epithelial and CD8+GZM+ T-cell CD73 expression that confers sensitivity to small-molecule inhibition of CD73 or Adora2b to promote CD8+ T-cell–mediated tumor regression. See related commentary by DelGiorno, p. 977

30 January 2020 in Molecular and Cellular Biology
Verified
Journal Article
Open access
PDF file
GLGuangbo Liu
Guangbo Liu
ABAaron Byrd
Aaron Byrd
AWAmanda Warner
Amanda Warner
FPFen Pei
Fen Pei
EBEman Basha
Eman Basha
JBJohn Ross Buchan
John Ross Buchan
Amyotrophic lateral sclerosis (ALS) is a fatal motor neuron degenerative disease. TDP-43 (TAR DNA-binding protein 43) and FUS (fused in sarcoma) are aggregation-prone RNA-binding proteins that in ALS can mislocalize to the cytoplasm of affected motor neuron cells, often forming cytoplasmic aggregates in the process. Such mislocalization and aggregation are implicated in ALS pathology, though the mechanism(s) of TDP-43 and FUS cytoplasmic toxicity remains unclear. Recently, we determined that the endocytic function aids the turnover (i.e., protein degradation) of TDP-43 and reduces TDP-43 toxicity. Here, we identified that Cdc48 and Ubx3, a Cdc48 cofactor implicated in endocytic function, regulates the turnover and toxicity of TDP-43 and FUS expressed in Saccharomyces cerevisiae. Cdc48 physically interacts and colocalizes with TDP-43, as does VCP, in ALS patient tissue. In yeast, FUS toxicity also depends strongly on endocytic function but not on autophagy under normal conditions. FUS expression also impairs endocytic function, as previously observed with TDP-43. Taken together, our data identify a role for Cdc48/VCP and endocytic function in regulating TDP-43 and FUS toxicity and turnover. Furthermore, endocytic dysfunction may be a common defect affecting the cytoplasmic clearance of ALS aggregation-prone proteins and may represent a novel therapeutic target of promise.

1 July 2018 in Marine Genomics
Verified
Journal Article
Closed access
ACAndrew E. Christie
Andrew E. Christie
AYAndy Yu
Andy Yu
MPMicah G. Pascual
Micah G. Pascual
Vittoria RoncalliVittoria Roncalli
Vittoria Roncalli
MCMatthew C. Cieslak
Matthew C. Cieslak
JHJ. Joe Hull
J. Joe Hull

1 October 2018 in Marine Genomics
Verified
Journal Article
Closed access
ACAndrew E. Christie
Andrew E. Christie
AYAndy Yu
Andy Yu
Vittoria RoncalliVittoria Roncalli
Vittoria Roncalli
MPMicah G. Pascual
Micah G. Pascual
MCMatthew C. Cieslak
Matthew C. Cieslak
JHJ. Joe Hull
J. Joe Hull