Infectious diseases have always been a major threat to the survival of humanity. Additionally, they bring an enormous economic burden to society. The conventional methods for bacteria identification are expensive, time-consuming and laborious. Therefore, it is of great importance to automatically rapidly identify pathogenic bacteria in a short time. Here, we constructed an AI-assisted system for automating rapid bacteria genus identification, combining the hyperspectral microscopic technology and a deep-learning-based algorithm Buffer Net. After being trained and validated in the self-built dataset, which consists of 11 genera with over 130,000 hyperspectral images, the accuracy of the algorithm could achieve 94.9%, which outperformed 1D-CNN, 2D-CNN and 3D-ResNet. The AI-assisted system we developed has great potential in assisting clinicians in identifying pathogenic bacteria at the single-cell level with high accuracy in a cheap, rapid and automatic way. Since the AI-assisted system can identify the pathogenic genus rapidly (about 30 s per hyperspectral microscopic image) at the single-cell level, it can shorten the time or even eliminate the demand for cultivating. Additionally, the system is user-friendly for novices.

In order to improve the clinical application of hyperspectral technology in the pathological diagnosis of tumor tissue, a joint diagnostic method based on spectral-spatial transfer features was established by simulating the actual clinical diagnosis process and combining micro-hyperspectral imaging with large-scale pathological data. In view of the limited sample volume of medical hyperspectral data, a multi-data transfer model pre-trained on conventional pathology datasets was applied to the classification task of micro-hyperspectral images, to explore the differences in spectral-spatial transfer features in the wavelength of 410–900 nm between tumor tissues and normal tissues. The experimental results show that the spectral-spatial transfer convolutional neural network (SST-CNN) achieved a classification accuracy of 95.46% for the gastric cancer dataset and 95.89% for the thyroid cancer dataset, thus outperforming models trained on single conventional digital pathology and single hyperspectral data. The joint diagnostic method established based on SST-CNN can complete the interpretation of a section of data in 3 min, thus providing a new technical solution for the rapid diagnosis of pathology. This study also explored problems involving the correlation between tumor tissues and typical spectral-spatial features, as well as the efficient transformation of conventional pathological and transfer spectral-spatial features, which solidified the theoretical research on hyperspectral pathological diagnosis.

The inhomogeneity of spectral pixel response is an unavoidable phenomenon in hyperspectral imaging, which is mainly manifested by the existence of inhomogeneity banding noise in the acquired hyperspectral data. It must be carried out to get rid of this type of striped noise since it is frequently uneven and densely distributed, which negatively impacts data processing and application. By analyzing the source of the instrument noise, this work first created a novel non-uniform noise removal method for a spatial dimensional push sweep hyperspectral imaging system. Clean and clear medical hyperspectral brain tumor tissue images were generated by combining scene-based and reference-based non-uniformity correction denoising algorithms, providing a strong basis for further diagnosis and classification. The precise procedure entails gathering the reference dark background image for rectification and the actual medical hyperspectral brain tumor image. The original hyperspectral brain tumor image is then smoothed using a weighted least squares algorithm model embedded with bilateral filtering (BLF-WLS), followed by a calculation and separation of the instrument fixed-mode fringe noise component from the acquired reference dark background image. The purpose of eliminating non-uniform fringe noise is achieved. In comparison to other common image denoising methods, the evaluation is based on the subjective effect and unreferenced image denoising evaluation indices. The approach discussed in this paper, according to the experiments, produces the best results in terms of the subjective effect and unreferenced image denoising evaluation indices (MICV and MNR). The image processed by this method has almost no residual non-uniform noise, the image is clear, and the best visual effect is achieved. It can be concluded that different denoising methods designed for different noises have better denoising effects on hyperspectral images. The non-uniformity denoising method designed in this paper based on a spatial dimension push-sweep hyperspectral imaging system can be widely used.

Glacial lakes are among the most sensitive indicators of climate change. With the ongoing climate warming, the number and area of glacial lakes are dramatically increased, particularly in High Mountain Asia (HMA), thereby concomitantly arousing the overall number and frequency of glacial lake outburst flood (GLOF) events as well, which pose a threat to vulnerable communities. Regular glacial lake monitoring is needed to detect the abnormal changes that could signify instabilities. However, the existing methods rely on the scoring regressions from combinations of glacial lake properties to assess the outburst risks of glacial lakes in a large scale, neglecting the spatial structures of lake scenes and property dependencies which may result in diverging hazard estimates. In this work, we conducted an appraisal of GLOF risks in HMA by reasoning the association between the glacial lake spatial and property data. Concretely, the cascade of spatial features and property features were classified with semi-supervised mode to further identify the lake that shares a similar pattern with the outburst of glacial lakes. As a result, our model yielded 88.26% validation accuracy in historical GLOF events from 1990 to 2022 in HMA. We thus evaluated the glacial lakes with our model in HMA in 2020 and finally characterized 49 glacial lakes as high-risk lakes. From the lake investigation, 4 glacial lakes that had been outburst but were not mentioned previously in HMA from 1990 to 2020 were provided. Moreover, among the dependency analysis of lake properties, the pairs of (subregion, precipitation) and (distance, lake type) show a strong dependency on the state of glacial lakes. No significant dependency, by contrast, exists between the area change rate and the other properties.