Chinese mitten crabs (Eriocheir sinensis) and largemouth bass (Micropterus salmoides) are popular with consumers in China. In recent years, the polyculture of these two species has received more attention, but little is known about how their interactions affect their commercially important traits. In this study, we set up an E. sinensis monoculture group (EM), a M. salmoides monoculture group (MM), and a polyculture group containing both species (EP) and compared the growth parameters, antioxidant statuses, nutritional compositions, and flavor qualities of crabs and fish between the different culture modes. Growth parameters in male crabs and largemouth bass were significantly higher in the EP group than in the EM and MM groups, respectively. Crabs in the EM and EP groups did not differ significantly in malondialdehyde content or glutathione peroxidase activity, regardless of the sampling time, which suggests that crabs in these groups had similar antioxidant and immunity capacities. Compared to the MM group, the activities of superoxide dismutase and catalase of largemouth bass in the EP group were higher, indicating the superior antioxidant capacity of fish in the polyculture mode. Alkaline phosphatase and acid phosphatase activities of both crabs and largemouth bass fluctuated with time in all groups, indicating their important roles in maintaining the health of these cultured species. The amino acid and fatty acid contents of edible tissues were similar between the EM and EP groups and the MM and EP groups, suggesting comparable flavor and quality of edible tissues in crabs and largemouth bass between culture modes. This study provides theoretical support for the polyculture of Chinese mitten crabs and largemouth bass.

The Chinese mitten crab, Eriocheir sinensis, is a water-dwelling crustacean that is widely distributed in northern hemisphere water systems. Body size is one of the crucial indicators determining the economic value of E. sinensis. However, research on the genetic basis and regulatory mechanisms of body size in this species is limited, with only a few relevant genes reported. Therefore, it is imperative to investigate the regulatory pathways associated with its growth. This study first utilized transcriptomic profiling and metabolomic sequencing to construct gene expression profiles and metabolite profiles of E. sinensis of different body sizes. Subsequently, through integrated omics analysis, the key genes and regulatory pathways involved in controlling the growth and size of crabs were preliminarily identified. This study found that larger female crabs exhibited significantly enhanced digestive functions, primarily reflected in the upregulation of trypsin-1 expression, suggesting its potentially pivotal role in regulating the growth and development of crabs. Interestingly, a variety of tissue-specific proteins such as APOLPP, RICK A, AGMO, and NEPHRIN, as well as REXO1L1P and ZCCHC24, indirectly influence the growth and development of crabs through their respective functional pathways. In addition, the key KEGG pathways, such as ECM–receptor interaction, cell adhesion, and the PI3K-Akt signaling pathway, were revealed to play central roles in the growth regulation of E. sinensis. These findings expand our understanding of the growth regulation mechanisms in crustaceans and offer potential molecular targets for body-size improvement in aquaculture.