Dimitris Triandafillidis

Mr. Dimitris Triandafillidis

University of Patras, Department of Biology
orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 January 2020 in Crystals
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Journal Article
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MSMaria Spiliopoulou
Maria Spiliopoulou
AVAlexandros Valmas
Alexandros Valmas
DTDimitris Triandafillidis
Dimitris Triandafillidis
CKChristos Kosinas
Christos Kosinas
AFAndrew Fitch
Andrew Fitch
IMIrene Margiolaki
Irene Margiolaki
Providing fundamental information on intra/intermolecular interactions and physicochemical properties, the three-dimensional structural characterization of biological macromolecules is of extreme importance towards understanding their mechanism of action. Among other methods, X-ray powder diffraction (XRPD) has proved its applicability and efficiency in numerous studies of different materials. Owing to recent methodological advances, this method is now considered a respectable tool for identifying macromolecular phase transitions, quantitative analysis, and determining structural modifications of samples ranging from small organics to full-length proteins. An overview of the XRPD applications and recent improvements related to the study of challenging macromolecules and peptides toward structure-based drug design is discussed. This review congregates recent studies in the field of drug formulation and delivery processes, as well as in polymorph identification and the effect of ligands and environmental conditions upon crystal characteristics. These studies further manifest the efficiency of protein XRPD for quick and accurate preliminary structural characterization.

25 September 2020 in Journal of Applied Crystallography
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Journal Article
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JLJanine Mia Lahey-Rudolph
Janine Mia Lahey-Rudolph
RSRobert Schönherr
Robert Schönherr
CJCy M. Jeffries
Cy M. Jeffries
CBClement Blanchet
Clement Blanchet
JBJuliane Boger
Juliane Boger
LRLars Redecke
Lars Redecke
Crystallization of recombinant proteins in living cells is an exciting new approach for structural biology that provides an alternative to the time-consuming optimization of protein purification and extensive crystal screening steps. Exploiting the potential of this approach requires a more detailed understanding of the cellular processes involved and versatile screening strategies for crystals in a cell culture. Particularly if the target protein forms crystalline structures of unknown morphology only in a small fraction of cells, their detection by applying standard visualization techniques can be time consuming and difficult owing to the environmental challenges imposed by the living cells. In this study, a high-brilliance and low-background bioSAXS beamline is employed for rapid and sensitive detection of protein microcrystals grown within insect cells. On the basis of the presence of Bragg peaks in the recorded small-angle X-ray scattering profiles, it is possible to assess within seconds whether a cell culture contains microcrystals, even in a small percentage of cells. Since such information cannot be obtained by other established detection methods in this time frame, this screening approach has the potential to overcome one of the bottlenecks of intracellular crystal detection. Moreover, the association of the Bragg peak positions in the scattering curves with the unit-cell composition of the protein crystals raises the possibility of investigating the impact of environmental conditions on the crystal structure of the intracellular protein crystals. This information provides valuable insights helping to further understand the in cellulo crystallization process.

16 November 2020 in Crystal Growth & Design
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Journal Article
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MSMaria Spiliopoulou
Maria Spiliopoulou
DTDimitris Triandafillidis
Dimitris Triandafillidis
AVAlexandros Valmas
Alexandros Valmas
CKChristos Kosinas
Christos Kosinas
AFAndrew Fitch
Andrew Fitch
IMIrene Margiolaki
Irene Margiolaki

12 March 2021 in Acta Crystallographica Section A Foundations and Advances
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Journal Article
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MSMaria Spiliopoulou
Maria Spiliopoulou
FKFotini Karavassili
Fotini Karavassili
DTDimitris Triandafillidis
Dimitris Triandafillidis
AVAlexandros Valmas
Alexandros Valmas
SFStavroula Fili
Stavroula Fili
IMIrene Margiolaki
Irene Margiolaki

13 October 2020 in Acta Crystallographica Section D Structural Biology
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Journal Article
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DTDimitris Triandafillidis
Dimitris Triandafillidis
NPNikolaos Parthenios
Nikolaos Parthenios
MSMaria Spiliopoulou
Maria Spiliopoulou
AVAlexandros Valmas
Alexandros Valmas
CKChristos Kosinas
Christos Kosinas
IMIrene Margiolaki
Irene Margiolaki

11 April 2023 in Acta Crystallographica Section D Structural Biology
Verified
Journal Article
Open access
PDF file
DTDimitris Triandafillidis
Dimitris Triandafillidis
FKFotini Karavassili
Fotini Karavassili
MSMaria Spiliopoulou
Maria Spiliopoulou
AVAlexandros Valmas
Alexandros Valmas
MAMaria Athanasiadou
Maria Athanasiadou
IMIrene Margiolaki
Irene Margiolaki
The polymorphism of human insulin upon pH variation was characterized via X-ray powder diffraction, employing a crystallization protocol previously established for co-crystallization with phenolic derivatives. Two distinct rhombohedral (R3) polymorphs and one cubic (I213) polymorph were identified with increasing pH, corresponding to the T6, T3R3 f and T2 conformations of insulin, respectively. The structure of the cubic T2 polymorph was determined via multi-profile stereochemically restrained Rietveld refinement at 2.7 Å resolution. This constitutes the first cubic insulin structure to be determined from crystals grown in the presence of zinc ions, although no zinc binding was observed. The differences of the polycrystalline variant from other cubic insulin structures, as well as the nature of the pH-driven phase transitions, are discussed in detail.