ADViSELipidomics is a novel Shiny app for preprocessing, analyzing and visualizing lipidomics data. It handles the outputs from LipidSearch and LIQUID for lipid identification and quantification and the data from the Metabolomics Workbench. ADViSELipidomics extracts information by parsing lipid species (using LIPID MAPS classification) and, together with information available on the samples, performs several exploratory and statistical analyses. When the experiment includes internal lipid standards, ADViSELipidomics can normalize the data matrix, providing normalized concentration values per lipids and samples. Moreover, it identifies differentially abundant lipids in simple and complex experimental designs, dealing with batch effect correction. Finally, ADViSELipidomics has a user-friendly graphical user interface and supports an extensive series of interactive graphics. ADViSELipidomics is freely available at https://github.com/ShinyFabio/ADViSELipidomics Supplementary data are available at Bioinformatics online.

Retrieving LST from infrared spectral observations is challenging because it needs separation from emissivity in surface radiation emission, which is feasible only when the state of the surface–atmosphere system is known. Thanks to its high spectral resolution, the Infrared Atmospheric Sounding Interferometer (IASI) instrument onboard Metop polar-orbiting satellites is the only sensor that can simultaneously retrieve LST, the emissivity spectrum, and atmospheric composition. Still, it cannot penetrate thick cloud layers, making observations blind to surface emissions under cloudy conditions, with surface and atmospheric parameters being flagged as voids. The present paper aims to discuss a downscaling–fusion methodology to retrieve LST missing values on a spatial field retrieved from spatially scattered IASI observations to yield level 3, regularly gridded data, using as proxy data LST from the Spinning Enhanced Visible and Infrared Imager (SEVIRI) flying on Meteosat Second Generation (MSG) platform, a geostationary instrument, and from the Advanced Very High-Resolution Radiometer (AVHRR) onboard Metop polar-orbiting satellites. We address this problem by using machine learning techniques, i.e., Gradient Boosting, Random Forest, Gaussian Process Regression, Neural Network, and Stacked Regression. We applied the methodology over the Po Valley region, a very heterogeneous area that allows addressing the trained models’ robustness. Overall, the methods significantly enhanced spatial sampling, keeping errors in terms of Root Mean Square Error (RMSE) and bias (Mean Absolute Error, MAE) very low. Although we demonstrate and assess the results primarily using IASI data, the paper is also intended for applications to the IASI follow-on, that is, IASI Next Generation (IASI-NG), and much more to the Infrared Sounder (IRS), which is planned to fly this year, 2025, on the Meteosat Third Generation platform (MTG).