Getnet Midekessa

Mr. Getnet Midekessa

Department of Pathophysiology, Institute of Biomedicine and Translational Medicine, University of Tartu
+1

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
12 October 2021 in Membranes
Verified
Journal Article
Open access
PDF file
Getnet MidekessaGetnet Midekessa
Getnet Midekessa
KGKasun Godakumara
Kasun Godakumara
KDKeerthie Dissanayake
Keerthie Dissanayake
Mohammad Mehedi HasanMohammad Mehedi Hasan
Mohammad Mehedi Hasan
QRQurat Ul Ain Reshi
Qurat Ul Ain Reshi
Alireza FazeliAlireza Fazeli
Alireza Fazeli
Research on extracellular vesicles (EVs) has intensified over the past decade, including fluorescent membrane labeling of EVs. An optimal fluorescent method requires the size of EVs to be preserved after labeling. Lipophilic fluorescent dyes, such as CellMask™ Green (CMG), have been widely used for this purpose. Here, we investigated conditions affecting the optimum CMG labeling of EVs derived from human choriocarcinoma cells (JAr) and different biological fluids using fluorescence NTA (fl-NTA). The effect of CMG labeling on the size, concentration and zeta potential (ZP) on JAr EVs purified with different methods were measured along with biological fluid-derived EVs. With the increase of CMG dye concentration, a significant decrease in the mean size of fluorescent nanoparticles (fl-NPs) was observed. The ZP of fl-NPs originating from JAr cells with the lowest and highest dye concentrations showed a significant shift towards more and less negative ZP values, respectively. Differences in the concentration of fl-NPs were observed for JAr EVs purified using size-exclusion chromatography (SEC) alone and SEC in combination with tangential flow filtration. The proportion of CMG labeling of NPs varied across different biological sources. CMG labeling may be a reliable technique for the detection of EVs using fl-NTA.

22 December 2022 in Veterinary Research Communications
Verified
Journal Article
Open access
PDF file
JPJohanna Piibor
Johanna Piibor
KDKeerthie Dissanayake
Keerthie Dissanayake
Getnet MidekessaGetnet Midekessa
Getnet Midekessa
AAAneta Andronowska
Aneta Andronowska
AKAnts Kavak
Ants Kavak
Alireza FazeliAlireza Fazeli
Alireza Fazeli
Extracellular vesicles (EV) have been identified in uterine fluid (UF), however the bovine UF-EV profile during different phases of the oestrous cycle has not yet been established. Therefore, we compared the UF-EV, and their protein profile at follicular and luteal phases of the oestrous cycle. UF samples were collected from healthy uteri of six live and six slaughtered cows at follicular or luteal phases. Isolation of EV was performed using tangential flow filtration followed by size exclusion chromatography. EV were characterized by nanoparticle tracking analysis (NTA), fluorescence NTA, zeta potential, and transmission electron microscopy. Mass-spectrometry was used to evaluate EV protein profile from live cows. Particle concentrations (mean ± SD) were higher (P < 0.05) at follicular than at luteal phase in both live (1.01 × 108 ± 1.66 × 107 vs 7.56 × 107 ± 1.80 × 107, respectively) and slaughtered cows (1.17 × 108 ± 2.34 × 107 vs 9.12 × 107 ± 9.77 × 106, respectively). The proportion of fluorescently labelled EV varied significantly between follicular and luteal phases across live (28.9 ± 1.9% vs 19.3 ± 2.8%, respectively) and slaughtered cows (26.5 ± 6.3% vs 27.3 ± 2 .7%, respectively). In total, 41 EV proteins were differentially expressed between the phases. Some of the proteins were involved in reproductive processes, cell adhesion and proliferation, and cellular metabolic processes. The results indicated differences in bovine UF-EV concentration and protein profile at follicular and luteal phases, which would suggest that EV modulate uterine microenvironment across the oestrous cycle. Further research is needed to understand the effect of EV changes throughout the oestrous cycle.

Verified
Journal Article
Open access
PDF file
FLFreddy Lättekivi
Freddy Lättekivi
IGIrina Guljavina
Irina Guljavina
Getnet MidekessaGetnet Midekessa
Getnet Midekessa
JVJaneli Viil
Janeli Viil
PHPaul Heath
Paul Heath
Alireza FazeliAlireza Fazeli
Alireza Fazeli
Psoriasis vulgaris (PsV) and psoriatic arthritis (PsA) are inflammatory diseases with unresolved pathophysiological aspects. Extracellular vesicles (EVs) play an important role in intercellular communication. We compared the miRNA contents and surface proteome of the EVs in the blood serum of PsV and PsA patients to healthy controls. Size-exclusion chromatography was used to isolate EVs from the blood serum of 12 PsV patients, 12 PsA patients and 12 healthy control subjects. EV samples were characterized and RNA sequencing was used to identify differentially enriched EV-bound miRNAs. We found 212 differentially enriched EV-bound miRNAs present in both PsV and PsA groups—a total of 13 miRNAs at FDR ≤ 0.05. The predicted target genes of these miRNAs were significantly related to lesser known but potentially disease-relevant pathways. The EV array revealed that PsV patient EV samples were significantly enriched with CD9 EV-marker compared to controls. Analysis of EV-bound miRNAs suggests that signaling via EVs in the blood serum could play a role in the pathophysiological processes of PsV and PsA. EVs may be able to fill the void in clinically applicable diagnostic and prognostic biomarkers for PsV and PsA.

Verified
Journal Article
Open access
PDF file
DSDulmini Nanayakkara Sapugahawatte
Dulmini Nanayakkara Sapugahawatte
KGKasun Godakumara
Kasun Godakumara
MMMihkel Mäesaar
Mihkel Mäesaar
GEGayandi Ekanayake
Gayandi Ekanayake
Getnet MidekessaGetnet Midekessa
Getnet Midekessa
Alireza FazeliAlireza Fazeli
Alireza Fazeli
Increasing antimicrobial resistance (AMR) challenges conventional antibiotics, prompting the search for alternatives. Extracellular vesicles (EVs) from pasteurised cattle milk offer promise, due to their unique properties. This study investigates their efficacy against five pathogenic bacteria, including Staphylococcus aureus ATCC 25923, aiming to combat AMR and to develop new therapies. EVs were characterised and tested using various methods. Co-culture experiments with S. aureus showed significant growth inhibition, with colony-forming units decreasing from 2.4 × 105 CFU/mL (single dose) to 7.4 × 104 CFU/mL (triple doses) after 12 h. Milk EVs extended lag time (6 to 9 h) and increased generation time (2.8 to 4.8 h) dose-dependently, compared to controls. In conclusion, milk EVs exhibit dose-dependent inhibition against S. aureus, prolonging lag and generation times. Despite limitations, this suggests their potential in addressing AMR.

22 December 2025 in Cells
Verified
Journal Article
Open access
PDF file
SMSeyed Omid Reza Mousavi
Seyed Omid Reza Mousavi
QRQurat Ul Ain Reshi
Qurat Ul Ain Reshi
KGKasun Godakumara
Kasun Godakumara
SMSubhashini Muhandiram
Subhashini Muhandiram
Getnet MidekessaGetnet Midekessa
Getnet Midekessa
Alireza FazeliAlireza Fazeli
Alireza Fazeli
Extracellular vesicles (EVs) are promising therapeutic agents due to their role in intercellular communication. This study examined the protective effects of milk-derived EVs (mEVs) on bovine oviductal epithelial cells (BOECs) under cobalt chloride (CoCl2)-induced oxidative stress (OS), comparing EVs stored at −80 °C or lyophilized. mEVs and algae-derived EVs (aEVs; negative control) were isolated via tangential flow filtration and applied at 107, 109, and 1011 particles/mL in three treatment strategies: pre-treatment, co-incubation, and post-treatment. mEVs specifically enhanced cell viability in all protocols except for post-treatment, where only 107 particles/mL was effective; meanwhile, storage method did not affect EV activity. Enzyme digestion suggested that internal EV cargos are potentially the dominant contributors to the protective response compared to surface-associated molecules. mEVs reduced the expression of the OS markers DDIT4 and HIF1A while promoting cell migration more effectively than aEVs. Pathway enrichment analysis of previously reported mEV miRNAs indicated regulation of cytokine production and glucocorticoid responses, potentially contributing to OS defense. mEV protein cargo analysis showed pathways primarily linked to peptidase and vesicle-related functions, suggesting that protein cargo may also contribute to the observed protective effects. Overall, mEVs protect BOECs against CoCl2-induced OS and maintain bioactivity after lyophilization.

24 July 2026 in Cell Communication and Signaling
Verified
Journal Article
Open access
PDF file
SMSubhashini Muhamdiram
Subhashini Muhamdiram
SMSeyed Omid Reza Mousavi
Seyed Omid Reza Mousavi
Suranga KodithuwakkuSuranga Kodithuwakku
Suranga Kodithuwakku
KGKasun Godakumara
Kasun Godakumara
SKSergei Kopanchuk
Sergei Kopanchuk
Alireza FazeliAlireza Fazeli
Alireza Fazeli
Extracellular vesicles (EVs) are emerging mediators of cellular communication, carrying bioactive molecules that can alter the function of recipient cells.