Competition with fisheries and incidental capture in fishing gear are the major current threats for seabirds at sea. Fishing is a traditional activity in Portugal and is mainly composed of a great number of small vessels. Given the lack of knowledge on effects of the Portuguese fishing fleet on seabird populations, bycatch was assessed in mainland coastal waters for 2010–2012. Interviews and on-board data were divided into 5 strata, according to fishing gear: Bottom trawling, Bottom longline, Purse seine, Beach seine, Polyvalent (≥12 m) and Polyvalent (<12 m). Polyvalent included Setnets, Traps and Demersal longlines. Overall, 68 birds were recorded to be bycaught. The average catch per unit effort (CPUE) was 0.05 birds per fishing event. Polyvalent (<12 m), Polyvalent (≥12 m) and Purse seiners had the biggest seabird bycatch rates, with 0.5 (CPUE=0.1), 0.11 (CPUE=0.05) and 0.2 (CPUE=0.11) birds per trip, respectively. Within Polyvalent gear, Setnets captured the largest diversity of seabird species (CPUE=0.06), while Demersal longline had the highest CPUE (0.86). Northern gannet was the most common bycaught species. Although more observation effort is required, our results suggest that substantial numbers of Balearic shearwater might be bycaught annually, mainly in Purse seine and Setnets

Interactions between cetaceans and the purse-seine fishery operating along the whole Portuguese continental coast were studied based on on-board observations from 2010 to 2011. Cetacean presence and mortality were estimated and characteristics under which interactions were most likely to occur were identified. Observations were made on 163 fishing trips (0.7% of the average annual number of fishing trips) and 302 fishing operations/hauls. Cetaceans were present during 16.9% of fishing events; common dolphins (Delphinus delphis) accounted for 96% of occurrences, mostly overnight in summer and early autumn. Regression models showed that cetacean presence during a fishing set was significantly (p < 0.05) associated with sardine catches, effort, and latitude/longitude. Encirclement and mortality occurred in 2.3 and 1.0% of fishing events, respectively. Encircled species were the common dolphin, bottlenose dolphin (Tursiops truncatus), and harbour porpoise (Phocoena phocoena), but only common dolphin showed mortality (three individuals); raised to fleet level, estimated total mortality rates of common dolphins were 69 (95% CI 37–110) in the north and 91 (95% CI 55–165) in the south for 2010 and 78 (95% CI 47–140) in the south only for 2011. The estimated annual mortality rate due to purse seining is 113 (95% CI 3–264) common dolphins, which is ∼0.63% of the current most optimistic estimate of population size for the Portuguese fishing area (SCANS II). The wide confidence limits, as well as variation between years, reflect low observer coverage, emphasizing the need for increased monitoring to cover gaps in the spatial and seasonal distribution of observer effort and provide reliable estimates of bycatch.

The ACCOBAMS Survey Initiative (ASI) is the first synoptic large-scale survey of the entire ACCOBAMS Area and as such it plays a key role in filling the current gaps in our biological and ecological knowledge of large vertebrate species occurring in the region. Data gathered during the ASI were analyzed in a distance sampling surface-modelling framework to assess the summer distribution, densities and patterns, as well as to investigate the correlates of these parameters, for large vertebrate species and taxa in the Mediterranean Basin. Static and dynamic explanatory variables, including water depth (m), distance to depth contours (km), distance to canyons and seabed slope (km), sea surface temperature (°C), mixed layer depth (m) and levels of chlorophyll-a (mg/l), were considered to predict density and compute its variance spatially at a resolution of 10x10 km. A strong longitudinal gradient from low densities in the east to high densities in the west is shared by most taxa. In addition, several taxa also showed a less marked latitudinal gradient varying in direction according to species, and finally, a few of them exhibited patchy distributions.