Mohammad Zubbair Malik

Dr. Mohammad Zubbair Malik

Dasman Diabetes Institute, Kuwait City, Al ‘Āşimah, Kuwait
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Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 December 2020 in Briefings in Bioinformatics
Verified
Journal Article
Closed access
CMChandra Mishra
Chandra Mishra
PPPreeti Pandey
Preeti Pandey
RSRavi Datta Sharma
Ravi Datta Sharma
MMMohammad Zubbair Malik
Mohammad Zubbair Malik
RMRAJ MONGRE
RAJ MONGRE
APAmresh Prakash
Amresh Prakash
The global pandemic crisis, coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has claimed the lives of millions of people across the world. Development and testing of anti-SARS-CoV-2 drugs or vaccines have not turned to be realistic within the timeframe needed to combat this pandemic. Here, we report a comprehensive computational approach to identify the multi-targeted drug molecules against the SARS-CoV-2 proteins, whichare crucially involved in the viral–host interaction, replication of the virus inside the host, disease progression and transmission of coronavirus infection. Virtual screening of 75 FDA-approved potential antiviral drugs against the target proteins, spike (S) glycoprotein, human angiotensin-converting enzyme 2 (hACE2), 3-chymotrypsin-like cysteine protease (3CLpro), cathepsin L (CTSL), nucleocapsid protein, RNA-dependent RNA polymerase (RdRp) and non-structural protein 6 (NSP6), resulted in the selection of seven drugs which preferentially bind to the target proteins. Further, the molecular interactions determined by molecular dynamics simulation revealed that among the 75 drug molecules, catechin can effectively bind to 3CLpro, CTSL, RBD of S protein, NSP6 and nucleocapsid protein. It is more conveniently involved in key molecular interactions, showing binding free energy (ΔGbind) in the range of −5.09 kcal/mol (CTSL) to −26.09 kcal/mol (NSP6). At the binding pocket, catechin is majorly stabilized by the hydrophobic interactions, displays ΔEvdW values: −7.59 to −37.39 kcal/mol. Thus, the structural insights of better binding affinity and favorable molecular interaction of catechin toward multiple target proteins signify that catechin can be potentially explored as a multi-targeted agent against COVID-19.

1 August 2021 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
BBBabajan Banaganapalli
Babajan Banaganapalli
NANuha Al-Rayes
Nuha Al-Rayes
ZAZuhier Ahmed Awan
Zuhier Ahmed Awan
FAFaten A. Alsulaimany
Faten A. Alsulaimany
AAAbdulhakeem S. Alamri
Abdulhakeem S. Alamri
NSNoor Ahamd Shaik
Noor Ahamd Shaik

29 December 2020 in Nanomaterials
Verified
Journal Article
Open access
PDF file
MAMugdha Agarwal
Mugdha Agarwal
MAMohammad Rizwan Alam
Mohammad Rizwan Alam
MHMohd Kabir Haider
Mohd Kabir Haider
MMMohammad Zubbair Malik
Mohammad Zubbair Malik
DKDaeKwang Kim
DaeKwang Kim
Alzheimer’s disease (AD), a progressively fatal neurodegenerative disorder, is the most prominent form of dementia found today. Patients suffering from Alzheimer’s begin to show the signs and symptoms, like decline in memory and cognition, long after the cellular damage has been initiated in their brain. There are several hypothesis for the neurodegeneration process; however, the lack of availability of in vivo models makes the recapitulation of AD in humans impossible. Moreover, the drugs currently available in the market serve to alleviate the symptoms and there is no cure for the disease. There have been two major hurdles in the process of finding the same—the inefficiency in cracking the complexity of the disease pathogenesis and the inefficiency in delivery of drugs targeted for AD. This review discusses the different drugs that have been designed over the recent years and the drug delivery options in the field of nanotechnology that have been found most feasible in surpassing the blood–brain barrier (BBB) and reaching the brain.

6 January 2021 in Molecular Neurobiology
Verified
Journal Article
Closed access
PDF file
KPKartikay Prasad
Kartikay Prasad
SASuliman Yousef AlOmar
Suliman Yousef AlOmar
SASaeed Awad M. Alqahtani
Saeed Awad M. Alqahtani
MMMohammad Zubbair Malik
Mohammad Zubbair Malik
VKVijay Kumar
Vijay Kumar

8 December 2020 in Briefings in Bioinformatics
Verified
Journal Article
Open access
PDF file
Aftab AlamAftab Alam
Aftab Alam
AKArbaaz Khan
Arbaaz Khan
NINikhat Imam
Nikhat Imam
MSMohd Faizan Siddiqui
Mohd Faizan Siddiqui
MWMohd Waseem
Mohd Waseem
RIRomana Ishrat
Romana Ishrat
The recurrent and recent global outbreak of the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has turned into a global concern which has infected more than 42 million people all over the globe, and this number is increasing in hours. Unfortunately, no vaccine or specific treatment is available, which makes it more deadly. A vaccine-informatics approach has shown significant breakthrough in peptide-based epitope mapping and opens the new horizon in vaccine development. In this study, we have identified a total of 15 antigenic peptides [including thymus cells (T-cells) and bone marrow or bursa-derived cells] in the surface glycoprotein (SG) of SARS-CoV-2 which is nontoxic and nonallergenic in nature, nonallergenic, highly antigenic and non-mutated in other SARS-CoV-2 virus strains. The population coverage analysis has found that cluster of differentiation 4 (CD4+) T-cell peptides showed higher cumulative population coverage over cluster of differentiation 8 (CD8+) peptides in the 16 different geographical regions of the world. We identified 12 peptides ((LTDEMIAQY, WTAGAAAYY, WMESEFRVY, IRASANLAA, FGAISSVLN, VKQLSSNFG, FAMQMAYRF, FGAGAALQI, YGFQPTNGVGYQ, LPDPSKPSKR, QTQTNSPRRARS and VITPGTNTSN) that are |$80\hbox{--} 90\%$| identical with experimentally determined epitopes of SARS-CoV, and this will likely be beneficial for a quick progression of the vaccine design. Moreover, docking analysis suggested that the identified peptides are tightly bound in the groove of human leukocyte antigen molecules which can induce the T-cell response. Overall, this study allows us to determine potent peptide antigen targets in the SG on intuitive grounds, which opens up a new horizon in the coronavirus disease (COVID-19) research. However, this study needs experimental validation by in vitro and in vivo.