Ksenia V. Ksenofontova

Dr. Ksenia V. Ksenofontova

Ivanovo State University of Chemistry and Technology, Ivanovo, Ivanovskaya Oblast’, Russia
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
16 August 2016 in Journal of Fluorescence
Verified
Journal Article
Closed access
PDF file
MYMarfin Yuriy
Marfin Yuriy
MSM. V. Shipalova
M. V. Shipalova
VKV. O. Kurzin
V. O. Kurzin
KKKsenia V. Ksenofontova
Ksenia V. Ksenofontova
ASAlexey Solomonov
Alexey Solomonov
ERE. V. Rumyantsev
E. V. Rumyantsev

16 November 2022 in Molecules
Verified
Journal Article
Open access
PDF file
KKKsenia V. Ksenofontova
Ksenia V. Ksenofontova
AKAnastasia A. Kerner
Anastasia A. Kerner
Alexander A. KsenofontovAlexander A. Ksenofontov
Alexander A. Ksenofontov
ASArtyom Yu. Shagurin
Artyom Yu. Shagurin
ПБПавел Бочаров
Павел Бочаров
MYMarfin Yuriy
Marfin Yuriy
A boron-dipyrromethene (BODIPY) derivative reactive towards amino groups of proteins (NHS-Ph-BODIPY) was synthesized. Spectroscopic and photophysical properties of amine-reactive NHS-Ph-BODIPY and its non-reactive precursor (COOH-Ph-BODIPY) in a number of organic solvents were investigated. Both fluorescent dyes were characterized by green absorption (521–532 nm) and fluorescence (538–552 nm) and medium molar absorption coefficients (46,500–118,500 M−1·cm−1) and fluorescence quantum yields (0.32 – 0.73). Solvent polarizability and dipolarity were found to play a crucial role in solvent effects on COOH-Ph-BODIPY and NHS-Ph-BODIPY absorption and emission bands maxima. Quantum-chemical calculations were used to show why solvent polarizability and dipolarity are important as well as to understand how the nature of the substituent affects spectroscopic properties of the fluorescent dyes. NHS-Ph-BODIPY was used for fluorescent labeling of a number of proteins. Conjugation of NHS-Ph-BODIPY with bovine serum albumin (BSA) resulted in bathochromic shifts of absorption and emission bands and noticeable fluorescence quenching (about 1.5 times). It was demonstrated that the sensitivity of BSA detection with NHS-Ph-BODIPY was up to eight times higher than with Coomassie brilliant blue while the sensitivity of PII-like protein PotN (PotN) detection with NHS-Ph-BODIPY and Coomassie brilliant blue was almost the same. On the basis of the molecular docking results, the most probable binding sites of NHS-Ph-BODIPY in BSA and PotN and the corresponding binding free energies were estimated.

1 February 2021 in Dyes and Pigments
Verified
Journal Article
Closed access
Alexander A. KsenofontovAlexander A. Ksenofontov
Alexander A. Ksenofontov
MLMikhail M. Lukanov
Mikhail M. Lukanov
Nataliya BichanNataliya Bichan
Nataliya Bichan
Ilya KhodovIlya Khodov
Ilya Khodov
NKNadezhda Kudryakova
Nadezhda Kudryakova
EAElena V. Antina
Elena V. Antina

16 August 2024 in ChemPhotoChem
Verified
Journal Article
Closed access
KKKsenia V. Ksenofontova
Ksenia V. Ksenofontova
ASArtyom Yu. Shagurin
Artyom Yu. Shagurin
EMEvgeniy E. Molchanov
Evgeniy E. Molchanov
Alexander A. KsenofontovAlexander A. Ksenofontov
Alexander A. Ksenofontov
DSDmitrii A. Sbytov
Dmitrii A. Sbytov
MYMarfin Yuriy
Marfin Yuriy

13 April 2020 in ChemChemTech
Verified
Journal Article
Open access
PDF file
KKKsenia V. Ksenofontova
Ksenia V. Ksenofontova
Alexander A. KsenofontovAlexander A. Ksenofontov
Alexander A. Ksenofontov
Ilya KhodovIlya Khodov
Ilya Khodov
EREvgeniy V. N. Rumyantsev
Evgeniy V. N. Rumyantsev
В настоящей работе описан направленный одностадийный синтез двух новых конъюгатов типа аминокислота – борфторидный комплекс дипиррометена (BODIPY), в которых остатки гистидина и тирозина связаны с остовом флуорофора через аминогруппу. Синтезированные вещества были полностью охарактеризованы посредством 1H и 11B спектроскопии ЯМР-, ИК-спектроскопии, времяпролетной масс-спектрометрии с матрично-активированной лазерной десорбцией/ионизацией. Все полученные данные находятся в соответствии с предполагаемыми структурами. Исследуемые конъюгаты BODIPY с аминокислотами были изучены методами спектрофото- и спектрофлуориметрии. Были получены спектры поглощения и испускания веществ в смеси диметилсульфоксид (ДМСО) – буферный раствор (БР) (1:1). Кроме того, был рассчитан ряд фотофизических характеристик конъюгатов, а именно: относительный квантовый выход флуоресценции, молярный коэффициент экстинкции, относительное время жизни возбужденного состояния, константы скорости излучательной и безызлучательной дезактивации. Были получены 3D спектры флуоресценции веществ в смеси ДМСО – БР (1:1). Было проведено спектрофото- и спектрофлуориметрическое титрование флуорофоров. Результаты титрования позволили нам дополнительно подтвердить стехиометрический состав конъюгатов BODIPY с аминокислотами. Был проведен квантовохимический анализ структурных и спектральных свойств веществ в основном состоянии. Результаты квантовохимических расчетов позволили понять природу взаимодействий BODIPY с аминокислотой в конъюгатах. Более того, было обнаружено, что синтезированные конъюгаты BODIPY с аминокислотами обладают высокой растворимостью в полярных растворителях. Таким образом, ряд уникальных свойств объектов настоящего исследования обеспечивает возможность их использования для визуализации как биоактивных макромолекул, так и биохимических процессов в живых клетках.

Verified
Journal Article
Open access
PDF file
DFDaniil N. Finogenov
Daniil N. Finogenov
APAlexander Pogonin
Alexander Pogonin
YZYuriy A. Zhabanov
Yuriy A. Zhabanov
KKKsenia V. Ksenofontova
Ksenia V. Ksenofontova
DPDominika Yu. Parfyonova
Dominika Yu. Parfyonova
PSPavel Stuzhin
Pavel Stuzhin
Vanadyl octa-(4-tert-butylphenyl)phthalocyanine (VOPc(t-BuPh)8) and vanadyl octa-(4-tert-butylphenyl)tetrapyrazinoporphyrazine (VOTPyzPz(t-BuPh)8) complexes were synthesized for the first time and confirmed by IR and UV-Vis spectroscopy and MALDI-TOF spectrometry. The method of synthesis of their precursors, 4,5-bis(4-tert-butylphenyl)phthalonitrile ((t-BuPh)2PN) and 5,6-bis(4-tert-butylphenyl)pyrazine-2,3-dicarbonitrile ((t-BuPh)2PDC), was modified, resulting in higher yields. For the vanadyl complexes, the basic properties were studied, and it was found that the red shift in the Q band in the first protonation step is approximately two times greater than that of previously known complexes. An electrochemical study showed the influence of aza-substitution on the redox properties and on the energies of the frontier orbitals of all the compounds presented. For all four considered compounds, quantum chemical calculations of the molecular structure, IR spectra, and electronic absorption spectra were carried out using density functional theory (DFT) and time-dependent density functional theory (TDDFT and simplified sTDDFT) approaches. According to the DFT calculations, vanadyl macrocyclic complexes have dome-shaped distorted structures. Experimental and theoretical IR and electronic absorption spectra were compared and interpreted.