Luis P da Silva

Dr. Luis P da Silva

BIOPOLIS-CIBIO-InBIO, University of Porto, Porto, Portugal
orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 July 2019 in Molecular Ecology Resources
Verified
Journal Article
Open access
PDF file
LSLuis P da Silva
Luis P da Silva
VMVanessa Mata
Vanessa Mata
PLPedro B. Lopes
Pedro B. Lopes
PPPaulo Pereira
Paulo Pereira
SJSimon N. Jarman
Simon N. Jarman
PBPedro Beja
Pedro Beja
The application of DNA metabarcoding to dietary analysis of trophic generalists requires using multiple markers in order to overcome problems of primer specificity and bias. However, limited attention has been given to the integration of information from multiple markers, particularly when they partly overlap in the taxa amplified, and vary in taxonomic resolution and biases. Here, we test the use of a mix of universal and specific markers, provide criteria to integrate multi‐marker metabarcoding data and a python script to implement such criteria and produce a single list of taxa ingested per sample. We then compare the results of dietary analysis based on morphological methods, single markers, and the proposed combination of multiple markers. The study was based on the analysis of 115 faeces from a small passerine, the Black Wheatears (Oenanthe leucura). Morphological analysis detected far fewer plant taxa (12) than either a universal 18S marker (57) or the plant trnL marker (124). This may partly reflect the detection of secondary ingestion by molecular methods. Morphological identification also detected far fewer taxa (23) than when using 18S (91) or the arthropod markers IN16STK (244) and ZBJ (231), though each method missed or underestimated some prey items. Integration of multi‐marker data provided far more detailed dietary information than any single marker and estimated higher frequencies of occurrence of all taxa. Overall, our results show the value of integrating data from multiple, taxonomically overlapping markers in an example dietary data set.

16 September 2021 in Ecological Applications
Verified
Journal Article
Open access
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VMVanessa Mata
Vanessa Mata
LSLuis P da Silva
Luis P da Silva
JVJoana Veríssimo
Joana Veríssimo
PHPedro Horta
Pedro Horta
HRHelena Raposeira
Helena Raposeira
PBPedro Beja
Pedro Beja
In multifunctional landscapes, diverse communities of flying vertebrate predators provide vital services of insect pest control. In such landscapes, conservation biocontrol should benefit service‐providing species to enhance the flow, stability and resilience of pest control services supporting the production of food and fiber. However, this would require identifying key service providers, which may be challenging when multiple predators interact with multiple pests. Here we provide a framework to identify the functional role of individual species to pest control in multifunctional landscapes. First, we used DNA metabarcoding to provide detailed data on pest species predation by diverse predator communities. Then, these data were fed into an extensive network analysis, in which information relevant for conservation biocontrol is gained from parameters describing network structure (e.g., modularity) and species roles in such network (e.g., centrality, specialization). We applied our framework to a Mediterranean landscape, where 19 bat species were found to feed on 132 insect pest species. Metabarcoding data revealed potentially important bats that consumed insect pest species in high frequency and/or diversity. Network analysis showed a modular structure, indicating sets of bat species that are required to regulate specific sets of insect pests. A few generalist bats had particularly important roles, either at network or module levels. Extinction simulations highlighted six bats, including species of conservation concern, which were sufficient to ensure that over three‐quarters of the pest species had at least one bat predator. Combining DNA metabarcoding and ecological network analysis provides a valuable framework to identify individual species within diverse predator communities that might have a disproportionate contribution to pest control services in multifunctional landscapes. These species can be regarded as candidate targets for conservation biocontrol, although additional information is needed to evaluate their actual effectiveness in pest regulation.

6 May 2025 in Global Ecology and Biogeography
Verified
Journal Article
Open access
KDKevin F. A. Darras
Kevin F. A. Darras
RRRodney A. Rountree
Rodney A. Rountree
SWSteven L. Van Wilgenburg
Steven L. Van Wilgenburg
ACAnna Cord
Anna Cord
FPFrederik Pitz
Frederik Pitz
TWThomas Cherico Wanger
Thomas Cherico Wanger
Aim: The urgency for remote, reliable and scalable biodiversity monitoring amidst mounting human pressures on ecosystems has sparked worldwide interest in Passive Acoustic Monitoring (PAM), which can track life underwater and on land. However, we lack a unified methodology to report this sampling effort and a comprehensive overview of PAM coverage to gauge its potential as a global research and monitoring tool. To address this gap, we created the Worldwide Soundscapes project, a collaborative network and growing database comprising metadata from 416 datasets across all realms (terrestrial, marine, freshwater and subterranean).Location: Worldwide, 12,343 sites, all ecosystem types.Time Period: 1991 to present.Major Taxa Studied: All soniferous taxa.Methods: We synthesise sampling coverage across spatial, temporal and ecological scales using metadata describing sampling locations, deployment schedules, focal taxa and audio recording parameters. We explore global trends in biological, anthropogenic and geophysical sounds based on 168 selected recordings from 12 ecosystems across all realms.Results: Terrestrial sampling is spatially denser (46 sites per million square kilometre—Mkm2) than aquatic sampling (0.3 and 1.8 sites/Mkm2 in oceans and fresh water) with only two subterranean datasets. Although diel and lunar cycles are well sampled across realms, only marine datasets (55%) comprehensively sample all seasons. Across the 12 ecosystems selected for exploring global acoustic trends, biological sounds showed contrasting diel patterns across ecosystems, declined with distance from the Equator, and were negatively correlated with anthropogenic sounds.Main Conclusions: PAM can inform macroecological studies as well as global conservation and phenology syntheses, but representation can be improved by expanding terrestrial taxonomic scope, sampling coverage in the high seas and subterranean ecosystems, and spatio‐temporal replication in freshwater habitats. Overall, this worldwide PAM network holds promise to support cross‐realm biodiversity research and monitoring efforts.

23 June 2021 in Nature
Verified
Journal Article
Closed access
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JGJuan P. González-Varo
Juan P. González-Varo
BRBeatriz Rumeu
Beatriz Rumeu
JAJörg Albrecht
Jörg Albrecht
JAJuan M. Arroyo
Juan M. Arroyo
RBRafael Silveira Bueno
Rafael Silveira Bueno
ATAnna Traveset
Anna Traveset

1 September 2015 in International Journal for Parasitology
Verified
Journal Article
Closed access
VMVanessa Mata
Vanessa Mata
LSLuis P da Silva
Luis P da Silva
RLRicardo Jorge Lopes
Ricardo Jorge Lopes
SDSerguei V Drovetski
Serguei V Drovetski

29 October 2018 in New Phytologist
Verified
Journal Article
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MCMarta Correia
Marta Correia
RHRuben Heleno
Ruben Heleno
LSLuis P da Silva
Luis P da Silva
JCJosé Miguel Costa
José Miguel Costa
SRSusana Rodríguez‐Echeverría
Susana Rodríguez‐Echeverría