Nils Jonathan Helmuth Averesch

Dr. Nils Jonathan Helmuth Averesch

University of Florida, Gainesville, Florida, USA
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
26 March 2018 in Frontiers in Bioengineering and Biotechnology
Verified
Journal Article
Open access
PDF file
Nils Jonathan Helmuth AvereschNils Jonathan Helmuth Averesch
Nils Jonathan Helmuth Averesch
JKJens Krömer
Jens Krömer
The aromatic nature of shikimate pathway intermediates gives rise to a wealth of potential bio-replacements for commonly fossil fuel-derived aromatics, as well as naturally produced secondary metabolites. Through metabolic engineering, the abundance of certain intermediates may be increased, while draining flux from other branches off the pathway. Often targets for genetic engineering lie beyond the shikimate pathway, altering flux deep in central metabolism. This has been extensively used to develop microbial production systems for a variety of compounds valuable in chemical industry, including aromatic and non-aromatic acids like muconic acid, para-hydroxybenzoic acid, and para-coumaric acid, as well as aminobenzoic acids and aromatic α-amino acids. Further, many natural products and secondary metabolites that are valuable in food- and pharma-industry are formed outgoing from shikimate pathway intermediates. (Re)construction of such routes has been shown by de novo production of resveratrol, reticuline, opioids, and vanillin. In this review, strain construction strategies are compared across organisms and put into perspective with requirements by industry for commercial viability. Focus is put on enhancing flux to and through shikimate pathway, and engineering strategies are assessed in order to provide a guideline for future optimizations.

21 March 2023 in Nature Communications
Verified
Journal Article
Open access
PDF file
RSRosa Santomartino
Rosa Santomartino
Nils Jonathan Helmuth AvereschNils Jonathan Helmuth Averesch
Nils Jonathan Helmuth Averesch
MBMarufa Bhuiyan
Marufa Bhuiyan
CCCharles S. Cockell
Charles S. Cockell
JCJesse Colangelo
Jesse Colangelo
LZLuis Zea
Luis Zea
Finding sustainable approaches to achieve independence from terrestrial resources is of pivotal importance for the future of space exploration. This is relevant not only to establish viable space exploration beyond low Earth–orbit, but also for ethical considerations associated with the generation of space waste and the preservation of extra-terrestrial environments. Here we propose and highlight a series of microbial biotechnologies uniquely suited to establish sustainable processes for in situ resource utilization and loop-closure. Microbial biotechnologies research and development for space sustainability will be translatable to Earth applications, tackling terrestrial environmental issues, thereby supporting the United Nations Sustainable Development Goals.

1 May 2015 in Metabolic Engineering
Verified
Journal Article
Closed access
TWThomas Williams
Thomas Williams
Nils Jonathan Helmuth AvereschNils Jonathan Helmuth Averesch
Nils Jonathan Helmuth Averesch
GWGal Winter
Gal Winter
MPM.R. Plan
M.R. Plan
CVClaudia Vickers
Claudia Vickers
JKJens Krömer
Jens Krömer

26 March 2024 in ACS Synthetic Biology
Verified
Journal Article
Open access
LRLynn J. Rothschild
Lynn J. Rothschild
Nils Jonathan Helmuth AvereschNils Jonathan Helmuth Averesch
Nils Jonathan Helmuth Averesch
ESElizabeth A. Strychalski
Elizabeth A. Strychalski
FMFelix Moser
Felix Moser
John GlassJohn Glass
John Glass
KAKate P. Adamala
Kate P. Adamala
The de novo construction of a living organism is a compelling vision. Despite the astonishing technologies developed to modify living cells, building a functioning cell "from scratch" has yet to be accomplished. The pursuit of this goal alone has─and will─yield scientific insights affecting fields as diverse as cell biology, biotechnology, medicine, and astrobiology. Multiple approaches have aimed to create biochemical systems manifesting common characteristics of life, such as compartmentalization, metabolism, and replication and the derived features, evolution, responsiveness to stimuli, and directed movement. Significant achievements in synthesizing each of these criteria have been made, individually and in limited combinations. Here, we review these efforts, distinguish different approaches, and highlight bottlenecks in the current research. We look ahead at what work remains to be accomplished and propose a "roadmap" with key milestones to achieve the vision of building cells from molecular parts.

19 July 2021 in Frontiers in Astronomy and Space Sciences
Verified
Journal Article
Open access
Aaron BerlinerAaron Berliner
Aaron Berliner
JHJacob M. Hilzinger
Jacob M. Hilzinger
AAAnthony J. Abel
Anthony J. Abel
MMMatthew J. McNulty
Matthew J. McNulty
GMGeorge Makrygiorgos
George Makrygiorgos
AAAdam P. Arkin
Adam P. Arkin
A crewed mission to and from Mars may include an exciting array of enabling biotechnologies that leverage inherent mass, power, and volume advantages over traditional abiotic approaches. In this perspective, we articulate the scientific and engineering goals and constraints, along with example systems, that guide the design of a surface biomanufactory. Extending past arguments for exploiting stand-alone elements of biology, we argue for an integrated biomanufacturing plant replete with modules for microbial in situ resource utilization, production, and recycling of food, pharmaceuticals, and biomaterials required for sustaining future intrepid astronauts. We also discuss aspirational technology trends in each of these target areas in the context of human and robotic exploration missions.

21 April 2023 in Nature Communications
Verified
Journal Article
Open access
PDF file
Nils Jonathan Helmuth AvereschNils Jonathan Helmuth Averesch
Nils Jonathan Helmuth Averesch
Aaron BerlinerAaron Berliner
Aaron Berliner
SNShannon N. Nangle
Shannon N. Nangle
SZSpencer Zezulka
Spencer Zezulka
GVGretchen L. Vengerova
Gretchen L. Vengerova
AAAdam P. Arkin
Adam P. Arkin
As renewed interest in human space-exploration intensifies, a coherent and modernized strategy for mission design and planning has become increasingly crucial. Biotechnology has emerged as a promising approach to increase resilience, flexibility, and efficiency of missions, by virtue of its ability to effectively utilize in situ resources and reclaim resources from waste streams. Here we outline four primary mission-classes on Moon and Mars that drive a staged and accretive biomanufacturing strategy. Each class requires a unique approach to integrate biomanufacturing into the existing mission-architecture and so faces unique challenges in technology development. These challenges stem directly from the resources available in a given mission-class—the degree to which feedstocks are derived from cargo and in situ resources—and the degree to which loop-closure is necessary. As mission duration and distance from Earth increase, the benefits of specialized, sustainable biomanufacturing processes also increase. Consequentially, we define specific design-scenarios and quantify the usefulness of in-space biomanufacturing, to guide techno-economics of space-missions. Especially materials emerged as a potentially pivotal target for biomanufacturing with large impact on up-mass cost. Subsequently, we outline the processes needed for development, testing, and deployment of requisite technologies. As space-related technology development often does, these advancements are likely to have profound implications for the creation of a resilient circular bioeconomy on Earth.