Omar Ali

Dr. Omar Ali

Plant-Microbe-Biotechnology Laboratory, Department of Life Sciences, FST, University of the West Indies, Saint Augustine, Trinidad and Tobago
orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 March 2021 in Plants
Verified
Journal Article
Open access
PDF file
Omar AliOmar Ali
Omar Ali
ARAdesh Ramsubhag
Adesh Ramsubhag
JJjayaraj jayaraman
jayaraj jayaraman
The use of seaweed-based bioproducts has been gaining momentum in crop production systems owing to their unique bioactive components and effects. They have phytostimulatory properties that result in increased plant growth and yield parameters in several important crop plants. They have phytoelicitor activity as their components evoke defense responses in plants that contribute to resistance to several pests, diseases, and abiotic stresses including drought, salinity, and cold. This is often linked to the upregulation of important defense-related genes and pathways in the plant system, priming the plant defenses against future attacks. They also evoke phytohormonal responses due to their specific components and interaction with plant growth regulation. Treatment by seaweed extracts and products also causes significant changes in the microbiome components of soil and plant in support of sustainable plant growth. Seaweed extracts contain a plethora of substances which are mostly organic, but trace levels of inorganic nutrient elements are also present. Fractionation of seaweed extracts into their components and their respective bioassays, however, has not yielded favorable growth effects. Only the whole seaweed extracts have been consistently proven to be very effective, which highlights the role of multiple components and their complex interactive effects on plant growth processes. Since seaweed extracts are highly organic, they are ideally suited for organic farming and environmentally sensitive crop production. They are also very compatible with other crop inputs, paving the way for an integrated management approach geared towards sustainability. The current review discusses the growth and functional effects evoked by seaweed extracts and their modes and mechanisms of action in crop plants which are responsible for elicitor and phytostimulatory activities. The review further analyses the potential value of seaweed extracts in integrated crop management systems towards sustainable crop production.

16 May 2022 in Scientific Reports
Verified
Journal Article
Open access
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Omar AliOmar Ali
Omar Ali
ARAdesh Ramsubhag
Adesh Ramsubhag
SRStephen Daniram Benn Jr. Ramnarine
Stephen Daniram Benn Jr. Ramnarine
JJjayaraj jayaraman
jayaraj jayaraman
Extracts of Ascophyllum nodosum are commonly used as commercial biostimulants in crop production. To further understand the seaweed extract-induced phenomena in plants, a transcriptomic study was conducted. RNA-seq differential gene expression analysis of tomato plants treated with a commercial A. nodosum extract formulation (Stimplex) revealed the up-regulation of 635 and down-regulation of 456 genes. Ontology enrichment analysis showed three gene categories were augmented, including biological processes, cellular components, and molecular functions. KEGG pathway analysis revealed that the extract had a strong influence on the expression of genes involved in carbon fixation, secondary metabolism, MAPK-signalling, plant hormone signal transduction, glutathione metabolism, phenylpropanoid and stilbenoid metabolism, and plant-pathogen interactions. qRT-PCR validation analysis using 15 genes established a strong correlation with the RNA sequencing results. The activities of defence enzymes were also significantly enhanced by seaweed extract treatment. Furthermore, AN-SWE treated tomato plants had significantly higher chlorophyll and growth hormone content and showed improved plant growth parameters and nutrient profiles than the control. It is postulated that seaweed extract-induced gene regulation was responsible for favourable plant responses that enabled better growth and tolerance to stress conditions. This study provides evidence at the transcriptomic level for the positive effects of foliar application of the Ascophyllum nodosum extract (Stimplex) observed in treated tomato plants.

9 March 2024 in BMC Microbiology
Verified
Journal Article
Open access
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SRStephen D. B. Ramnarine
Stephen D. B. Ramnarine
Omar AliOmar Ali
Omar Ali
JJjayaraj jayaraman
jayaraj jayaraman
ARAdesh Ramsubhag
Adesh Ramsubhag
Background: Copper-induced gene expression in Xanthomonas campestris pv. campestris (Xcc) is typically evaluated using targeted approaches involving qPCR. The global response to copper stress in Xcc and resistance to metal induced damage is not well understood. However, homologs of heavy metal efflux genes from the related Stenotrophomonas genus are found in Xanthomonas which suggests that metal related efflux may also be present. Methods and Results: Gene expression in Xcc strain BrA1 exposed to 0.8 mM CuSO4.5H2O for 15 minutes was captured using RNA-seq analysis. Changes in expression was noted for genes related to general stress responses and oxidoreductases, biofilm formation, protein folding chaperones, heat-shock proteins, membrane lipid profile, multiple drug and efflux (MDR) transporters, and DNA repair were documented. At this timepoint only the cohL (copper homeostasis/tolerance) gene was upregulated as well as a chromosomal czcCBA efflux operon. An additional screen up to 4 hrs using qPCR was conducted using a wider range of heavy metals. Target genes included a cop-containing heavy metal resistance island and putative metal efflux genes. Several efflux pumps, including a copper resistance associated homolog from S. maltophilia, were upregulated under toxic copper stress. However, these pumps were also upregulated in response to other toxic heavy metals. Additionally, the temporal expression of the coh and cop operons was also observed, demonstrating co-expression of tolerance responses and later activation of part of the cop operon. Conclusions: Overall, initial transcriptional responses focused on combating oxidative stress, mitigating protein damage and potentially increasing resistance to heavy metals and other biocides. A putative copper responsive efflux gene and others which might play a role in broader heavy metal resistance were also identified. Furthermore, the expression patterns of the cop operon in conjunction with other copper responsive genes allowed for a better understanding of the fate of copper ions in Xanthomonas. This work provides useful evidence for further evaluating MDR and other efflux pumps in metal-specific homeostasis and tolerance phenotypes in the Xanthomonas genus. Furthermore, non-canonical copper tolerance and resistance efflux pumps were potentially identified. These findings have implications for interpreting MIC differences among strains with homologous copLAB resistance genes, understanding survival under copper stress, and resistance in disease management.


19 July 2026 in Discover Plants
Verified
Journal Article
Open access
PDF file
Omar AliOmar Ali
Omar Ali
MAMarie-Ange Arsene
Marie-Ange Arsene
ARAdesh Ramsubhag
Adesh Ramsubhag
JJjayaraj jayaraman
jayaraj jayaraman
Several environmental and economic issues have been brought about by mass accumulations of Sargassum seaweed along the coastlines in Trinidad and Tobago, and the wider Caribbean region. Though there are many issues associated with this seaweed biomass, there remains opportunities to transform this problem into a solution. The current study presents the evaluation of a Sargassum biostimulant formulation (OJA1) and its effect on tomato. Tomato plants were foliar (0.5% v/v) treated with the OJA1 biostimulant under both greenhouse and field conditions. OJA1 significantly improved plant performance (p < 0.05) by means of increased chlorophyll (22.7%), plant height (29.3%), root biomass (34.4%), shoot biomass (49.6%), and yield (54.8%), while reducing disease severity by 37.8% for bacterial spot and 37.5% for early blight under greenhouse conditions. In field trials, OJA1 significantly increased yield and reduced disease severity across both growing seasons. Yield increases ranged from 75.6–103.2% with OJA1 alone and 114.6–154.8% when alternated with fungicides. Similarly, bacterial leaf spot and early blight severity were reduced by up to 50.6% and 61.8%, respectively, relative to the Control. Molecular mechanistic testing revealed that OJA1-treated tomato plants had more than a two-fold increase in gene transcripts responsible for abiotic/biotic stress tolerance and biosynthesis of growth hormones. Additionally, OJA1-treated plants had significantly lower DNA levels of both pathogens. Additional analysis further showed that OJA1-treated plants had significantly higher hormonal content (auxin, cytokinin, and gibberellin), and fruits had significantly higher mineral content (N, P, K, Na, and Zn) than Control plants. The results exemplify the valorisation potential of Sargassum and could contribute to sustainable agriculture and propels economic development in coastal communities.

4 February 2026 in Biocatalysis and Agricultural Biotechnology
Verified
Journal Article
Closed access
ALAdana Lutchman
Adana Lutchman
Omar AliOmar Ali
Omar Ali
ABArvinda Bharat
Arvinda Bharat
USUddesh M Sahadeo
Uddesh M Sahadeo
SCSimran Chadee
Simran Chadee
JJjayaraj jayaraman
jayaraj jayaraman