Şebnem Şahin

Ms. Şebnem Şahin

Mikro Biyosistemler A.Ş., ODTÜ Teknokent MET Yerleskesi, No:280/B/10, 06530, Ankara, Turkey

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 October 2018
Verified
Book Chapter
Closed access
PDF file
ŞŞŞebnem Şahin
Şebnem Şahin
STSüleyman Ali Tuncel
Süleyman Ali Tuncel
KSKouroush Salimi
Kouroush Salimi
EBElif Bilgiç
Elif Bilgiç
PETEK KORKUSUZPETEK KORKUSUZ
PETEK KORKUSUZ
FKFeza Korkusuz
Feza Korkusuz

30 October 2020 in Micromachines
Verified
Journal Article
Open access
PDF file
GÖGürhan Özkayar
Gürhan Özkayar
EMEge Mutlu
Ege Mutlu
ŞŞŞebnem Şahin
Şebnem Şahin
YYYAGMUR DEMIRCAN YALCIN
YAGMUR DEMIRCAN YALCIN
TTTaylan Töral
Taylan Töral
EÖEbru Özgür
Ebru Özgür
Being one of the major pillars of liquid biopsy, isolation and characterization of circulating tumor cells (CTCs) during cancer management provides critical information on the evolution of cancer and has great potential to increase the success of therapies. In this article, we define a novel strategy to effectively enrich CTCs from whole blood based on size, utilizing a spiral microfluidic channel embedded with a hydrofoil structure at the downstream of the spiral channel. The hydrofoil increases the distance between the streams of CTCs and peripheral blood cells, which are already distributed about two focal axes by the spiral channel, thereby improving the resolution of the separation. Analytical validation of the system has been carried out using Michigan Cancer Foundation-7 (MCF7) breast cancer cell lines spiked into blood samples from healthy donors, and the performance of the system in terms of white blood cell (WBC) depletion, CTC recovery rate and cell viability has been shown in single or two-step process: by passing the sample once or twice through the microfluidic chip. Single step process yielded high recovery (77.1%), viable (84.7%) CTCs. When the collected cell suspension is re-processed by the same chip, recovery decreases to 65.5%, while the WBC depletion increases to 88.3%, improving the purity. Cell viability of >80% was preserved after two-step process. The novel microfluidic chip is a good candidate for CTC isolation applications requiring high recovery rate and viability, including functional downstream analyses for variety of cancer types.

23 October 2024 in PLOS ONE
Verified
Journal Article
Open access
PDF file
MKMeltem Kilercik
Meltem Kilercik
EÖEbru Özgür
Ebru Özgür
ŞŞŞebnem Şahin
Şebnem Şahin
Begum Sen DoganBegum Sen Dogan
Begum Sen Dogan
EMEge Mutlu
Ege Mutlu
HKHaluk Külah
Haluk Külah
Prostate cancer (PCa) is the second most common cancer among men and the fifth leading cause of cancer death. Circulating tumor cell (CTC) enumeration and characterisation in PCa has been shown to provide valuable information on prognosis of disease, therapy management and detection of resistance. Here, Cellsway’s microfluidic platform for high-throughput enrichment of intact CTC populations was used to isolate CTCs from the blood of 20 localised PCa patients and 10 healthy donor samples to evaluate the clinical performance of the technology. To enumerate and characterise CTCs, a multi-parameter flow cytometry analysis was performed on the enriched CTC suspension using CTC-specific biomarkers. CTCs were detected in 17 of 20 patient samples, which corresponds to 85% CTC positivity. The median CTC count per 7.5 ml blood was 2 (1–9). In 80% of patients (n = 16), the number of CTCs ranged from 1 to 5, and in 5% of patients (n = 1) the number of CTCs was above 5. No CTCs were observed in the blood samples of 10 healthy volunteers, demonstrating the high specificity and low risk of false positives of the technology.

19 October 2023 in Biosensors
Verified
Journal Article
Open access
PDF file
Begum Sen DoganBegum Sen Dogan
Begum Sen Dogan
MDMehmet Alper Demir
Mehmet Alper Demir
BSBuket Sahin
Buket Sahin
EYEnder Yildirim
Ender Yildirim
GKGizem Karayalcin
Gizem Karayalcin
HKHaluk Külah
Haluk Külah
The isolation of circulating tumor cells (CTCs) from peripheral blood with high efficiency remains a challenge hindering the utilization of CTC enrichment methods in clinical practice. Here, we propose a microfluidic channel design for the size-based hydrodynamic enrichment of CTCs from blood in an epitope-independent and high-throughput manner. The microfluidic channel comprises a spiral-shaped part followed by a widening part, incorporating successive streamlined pillars, that improves the enrichment efficiency. The design was tested against two benchmark designs, a spiral microfluidic channel and a spiral microfluidic channel followed by a widening channel without the hydrofoils, by processing 5 mL of healthy blood samples spiked with 100 MCF-7 cells. The results proved that the design with hydrofoil-shaped pillars perform significantly better in terms of recovery (recovery rate of 67.9% compared to 23.6% in spiral and 56.7% in spiral with widening section), at a cost of slightly lower white blood cell (WBC) depletion (depletion rate of 94.2% compared to 98.6% in spiral and 94.2% in spiral with widening section), at 1500 µL/min flow rate. For analytical validation, the design was further tested with A549, SKOV-3, and BT-474 cell lines, yielding recovery rates of 62.3 ± 8.4%, 71.0 ± 6.5%, and 82.9 ± 9.9%, respectively. The results are consistent with the size and deformability variation in the respective cell lines, where the increasing size and decreasing deformability affect the recovery rate in a positive manner. The analysis before and after the microfluidic chip process showed that the process does not affect cell viability.

1 August 2019 in Journal of Drug Delivery Science and Technology
Verified
Journal Article
Closed access
ŞŞŞebnem Şahin
Şebnem Şahin
EBElif Bilgiç
Elif Bilgiç
KSKouroush Salimi
Kouroush Salimi
ATAli Tuncel
Ali Tuncel
BKBeren Karaosmanoglu
Beren Karaosmanoglu
FKFeza Korkusuz
Feza Korkusuz

2 January 2026 in Biosensors
Verified
Journal Article
Open access
PDF file
EÖEbru Özgür
Ebru Özgür
AÇAyça Çırçır
Ayça Çırçır
Begum Sen DoganBegum Sen Dogan
Begum Sen Dogan
ŞŞŞebnem Şahin
Şebnem Şahin
GKGizem Karayalcin
Gizem Karayalcin
SKSaadettin Kılıçkap
Saadettin Kılıçkap
Lung cancer is the leading cause of cancer-related mortality worldwide, with non-small-cell lung cancer (NSCLC) accounting for the majority of cases. Standard tissue biopsies are invasive and unsuitable for repeated monitoring. Liquid biopsy technologies, particularly circulating tumor cell (CTC) analysis, offer a minimally invasive alternative for real-time disease tracking. To address the need for efficient and reproducible CTC isolation, we developed the Cellsway microfluidic CTC enrichment and identification platform, which employs inertial hydrodynamics in a spiral-shaped microfluidic channel comprising hydrofoil-shaped pillars to enable high-throughput, label-free enrichment of CTCs while preserving cell integrity, followed by an optimized CTC identification assay. Analytical performance assessed through spiking experiments using NSCLC cell lines demonstrated recovery rates of 91.9% for H1975 cells and 78.3% for A549 cells. Clinical validation was performed on blood samples from 51 stage IV NSCLC patients. A 7.5 mL volume of peripheral blood was processed with the SwayBox platform, and enriched CTCs were identified through an optimized multiplex immunofluorescence protocol. CTCs were detected in 47% of NSCLC patients, with counts ranging from 0 to 72 cells per 7.5 mL of blood. At a cutoff of 1 CTC per 7.5 mL, the assay achieved a specificity of 95%. Patient-derived CTCs exhibited smaller mean diameters compared to cultured NSCLC cell lines, yet were effectively enriched through hydro-dynamic tuning. These findings demonstrate that the Cellsway platform enables efficient and re-producible CTC isolation with high specificity, supporting its potential utility for clinical monitoring and precision oncology in NSCLC.