Simon Sorensen

Dr. Simon Sorensen

Tyndall National Institute, Cork, Ireland
orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 September 2022 in Biosensors
Verified
Journal Article
Open access
PDF file
RGRachel Georgel
Rachel Georgel
KGKonstantin Grygoryev
Konstantin Grygoryev
SSSimon Sorensen
Simon Sorensen
HLHuihui Lu
Huihui Lu
SAStefan Andersson-Engels
Stefan Andersson-Engels
DODaniel O'Hare
Daniel O'Hare
This work is an overview of silicon photomultipliers (SiPMs) with a view to defining their importance for bio-photonic and clinical applications. SiPMs are benchmarked against other common photodetectors, namely, PIN diodes and avalanche photodetectors (APDs) and are compared with respect to important circuit design parameters. It will be shown that careful selection of the design bias voltage, overvoltage, gain defining components and device integration to micro-optics can allow SiPM detectors to achieve considerable sensitivity for auto-fluorescence (AF) detection and a wide dynamic range at low optical powers (~1 pW to ~4 μW). The SiPM has a manageable bias voltage (~25 V to ~30 V DC) for systems integration, and with optimised sensitivity it will enhance bio-photonic research in the area of AF to detect intraoperatively, for example, brain tumour margins.

17 May 2023 in Micromachines
Verified
Journal Article
Open access
PDF file
LNLorenzo Niemitz
Lorenzo Niemitz
SSStefan van der Stel
Stefan van der Stel
SSSimon Sorensen
Simon Sorensen
WMWalter Messina
Walter Messina
Sanathana Konugolu Venkata SekarSanathana Konugolu Venkata Sekar
Sanathana Konugolu Venkata Sekar
RBRay Burke
Ray Burke
In vivo tissue imaging is an essential tool for medical diagnosis, surgical guidance, and treatment. However, specular reflections caused by glossy tissue surfaces can significantly degrade image quality and hinder the accuracy of imaging systems. In this work, we further the miniaturisation of specular reflection reduction techniques using micro cameras, which have the potential to act as intra-operative supportive tools for clinicians. In order to remove these specular reflections, two small form factor camera probes, handheld at 10 mm footprint and miniaturisable to 2.3 mm, are developed using different modalities, with line-of-sight to further miniaturisation. (1) The sample is illuminated via multi-flash technique from four different positions, causing a shift in reflections which are then filtered out in a post-processing image reconstruction step. (2) The cross-polarisation technique integrates orthogonal polarisers onto the tip of the illumination fibres and camera, respectively, to filter out the polarisation maintaining reflections. These form part of a portable imaging system that is capable of rapid image acquisition using different illumination wavelengths, and employs techniques that lend themselves well to further footprint reduction. We demonstrate the efficacy of the proposed system with validating experiments on tissue-mimicking phantoms with high surface reflection, as well as on excised human breast tissue. We show that both methods can provide clear and detailed images of tissue structures along with the effective removal of distortion or artefacts caused by specular reflections. Our results suggest that the proposed system can improve the image quality of miniature in vivo tissue imaging systems and reveal underlying feature information at depth, for both human and machine observers, leading to better diagnosis and treatment outcomes.

3 December 2024 in Biomedical Optics Express
Verified
Journal Article
Open access
SSSimon Sorensen
Simon Sorensen
WMWalter Messina
Walter Messina
LNLorenzo Niemitz
Lorenzo Niemitz
COClaire O’dOwling
Claire O’dOwling
PBPiotr Buszman
Piotr Buszman
RBRay Burke
Ray Burke
Cardiovascular imaging with camera-on-tip endoscopes has the potential to provide physiologically relevant data on the tissue state and device placement that can improve clinical outcomes. In this work, we review the unmet clinical need for image-based in vivo cardiovascular diagnostics and guidance for minimally invasive procedures. We present a 7 Fr camera-on-tip endoscope with fibre-coupled multispectral illumination that includes methods for imaging in a blood-filled field of view (FOV). We demonstrate that the endoscope can be navigated from the femoral artery to cardiac regions such as the left atrium and left ventricle in a porcine model, where in vivo images of the cardiac walls are recorded. We further show that physiologically relevant parameters such as heart rate and respiration can be extracted from the images and that changes to tissue state can be inferred from the imaging data. Finally, a methodology for merging the imaging data with diffuse reflection spectroscopy (DRS) recorded through the optical fibre is outlined.

25 September 2024 in Sensors
Verified
Journal Article
Open access
PDF file
WMWalter Messina
Walter Messina
LNLorenzo Niemitz
Lorenzo Niemitz
SSSimon Sorensen
Simon Sorensen
COClaire O’dowling
Claire O’dowling
PBPiotr Buszman
Piotr Buszman
RBRay Burke
Ray Burke
In this paper, we present the design and fabrication of a novel chip-on-tip catheter, which uses a microcamera and optical fibres to capture in vivo images in a beating porcine heart thanks to a saline flush to clear the blood field. Here, we demonstrate the medical utility and mechanical robustness of this catheter platform system, which could be used for other optical diagnostic techniques, surgical guidance, and clinical navigation. We also discuss some of the challenges and system requirements associated with developing a miniature prototype for such a study and present assembly instructions. Methods of clearing the blood field are discussed, including an integrated flush channel at the distal end. This permits the capture of images of the endocardial walls. The device was navigated under fluoroscopic guiding, through a guiding catheter to various locations of the heart, where images were successfully acquired. Images were captured at the intra-atrial septum, in the left atrium after a trans-septal cross procedure, and in the left ventricle, which are, to the best of our knowledge, the first images captured in an in vivo beating heart using endoscopic techniques.

1 May 2025 in Journal of Biomedical Optics
Verified
Journal Article
Open access
PDF file
LRLotte M. de Roode
Lotte M. de Roode
SSSimon Sorensen
Simon Sorensen
SSStefan van der Stel
Stefan van der Stel
LBLisanne De Boer
Lisanne De Boer
YWYineng Wang
Yineng Wang
RBRay Burke
Ray Burke
Colorectal cancer is the third most frequent type of cancer and the second most common cause of cancer-related death worldwide.1 Approximately 50% of patients with colorectal cancer present with liver metastases at initial diagnosis or develop liver metastasis during the course of the disease.2 Liver biopsy is an essential procedure for initial diagnosis and molecular analysis to determine the most appropriate treatment. However, even with imaging guidance methods, ∼15% of percutaneous liver biopsies are unsuccessful.3 It has been clearly demonstrated that increasing the number of needle passes per procedure improves diagnostic yield. However, increasing the number of needle passes also significantly increases the risk of complications.4 There is, therefore, an unmet need to increase the success rate of percutaneous liver biopsies without increasing the number of needle passes and possibly even decreasing the number of needle passes needed to obtain an adequate diagnostic yield.

27 October 2022
Verified
Book Chapter
Closed access
PDF file
MAMajed Alsharari
Majed Alsharari
LNLorenzo Niemitz
Lorenzo Niemitz
SSSimon Sorensen
Simon Sorensen
RWRoger Woods
Roger Woods
RBRay Burke
Ray Burke
SMSon T. Mai
Son T. Mai