Yan Yan

Dr. Yan Yan

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Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 February 2018 in Journal of Biomedical Optics
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Moein MozaffarzadehMoein Mozaffarzadeh
Moein Mozaffarzadeh
YYYan Yan
Yan Yan
MMMohammad Mehrmohammadi
Mohammad Mehrmohammadi
BMBahador Makkiabadi
Bahador Makkiabadi
Photoacoustic imaging (PAI) is a promising medical imaging modality providing the spatial resolution of ultrasound imaging and the contrast of optical imaging. For linear-array PAI, a beamformer can be used as the reconstruction algorithm. Delay-and-sum (DAS) is the most prevalent beamforming algorithm in PAI. However, using DAS beamformer leads to low-resolution images as well as high sidelobes due to nondesired contribution of off-axis signals. Coherence factor (CF) is a weighting method in which each pixel of the reconstructed image is weighted, based on the spatial spectrum of the aperture, to mainly improve the contrast. We demonstrate that the numerator of the formula of CF contains a DAS algebra and propose the use of a delay-multiply-and-sum beamformer instead of the available DAS on the numerator. The proposed weighting technique, modified CF (MCF), has been evaluated numerically and experimentally compared to CF. It was shown that MCF leads to lower sidelobes and better detectable targets. The quantitative results of the experiment (using wire targets) show that MCF leads to for about 45% and 40% improvement, in comparison with CF, in the terms of signal-to-noise ratio and full-width-half-maximum, respectively.

1 January 2018 in Developmental Neuroscience
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ZSZhongjie Shi
Zhongjie Shi
JVJeannette Vasquez-Vivar
Jeannette Vasquez-Vivar
KLKehuan Luo
Kehuan Luo
YYYan Yan
Yan Yan
FNFrances Northington
Frances Northington
STSidhartha Tan
Sidhartha Tan
Background: Chorioamnionitis from ascending bacterial infection through the endocervix is a potential risk factor for cerebral palsy. Tetrahydrobiopterin, an essential cofactor for nitric oxide synthase (NOS) and amino acid hydroxylases, when augmented in the fetal brain, prevents some of the cerebral palsy-like deficits in a rabbit hypoxia-ischemia model. Objectives: To study the effect of lipopolysaccharide (LPS)-induced intrauterine inflammation in preterm gestation on motor deficits in the newborn, and whether biosynthesis of tetrahydrobiopterin or inflammatory mediators is affected in the fetal brain. Methods: Pregnant rabbits at 28 days gestation (89% term) were administered either saline or LPS into both endocervical openings. One group underwent spontaneous delivery, and neurobehavioral tests were performed at postnatal day (P) 1 and P11, with some kits being sacrificed at P1 for histological analysis. Another group underwent Cesarean section 24 h after LPS administration. Gene sequences for rabbit biosynthetic enzymes of tetra­hydrobiopterin pathways were determined and analyzed in addition to cytokines, using quantitative real-time polymerase chain reaction. Results: Exposure to 200 μg/kg/mL LPS caused a locomotion deficit and mild hypertonia at P1. By P11, most animals turned into normal-appearing kits. There was no difference in neuronal cell death in the caudate between hypertonic and nonhypertonic kits at P1 (n = 3–5 in each group). Fetal brain GTP cyclohydrolase I was increased, whereas sepiapterin reductase and 6-pyruvoyltetrahydropterin synthase were decreased, 24 h after LPS administration. Neuronal NOS was also increased. Regardless of the position in the uterus or the brain region, expression of TNF-α and TGF-β was decreased, whereas that of IL-1β, IL-6, and IL-8 was increased (n = 3–4 in each group). Conclusions: This is the first study using an ascending LPS-induced intrauterine inflammation model in rabbits, showing mostly transient hypertonia and mainly locomotor deficits in the kits. Not all proinflammatory cytokines are increased in the fetal brain following LPS administration. Changes in key tetrahydro­biopterin biosynthetic enzymes possibly indicate different effects of the inflammatory insult.

7 October 2020 in Journal of Biomedical Optics
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ENEbrahim Najafzadeh
Ebrahim Najafzadeh
PFParastoo Farnia
Parastoo Farnia
SLSaeedeh N. Lavasani
Saeedeh N. Lavasani
MBMaryam Basij
Maryam Basij
YYYan Yan
Yan Yan
MMMohammad Mehrmohammadi
Mohammad Mehrmohammadi
In the last two decades, photoacoustic imaging (PAI) as a non-invasive hybrid imaging modality has been used in a wide range of preclinical and clinical applications, such as functional brain mapping,1,2 molecular imaging,3,4 cancer diagnosis and staging,5 – 8 tissue vasculature imaging,9 – 12 guiding interventional procedures,13,14 and dental health.15,16 PAI detects the optical absorption contrast in tissue through the conversion of light to heat and thermoelastic effect, leading to the generation of acoustic waves.17 – 19 When the tissue is illuminated by short light pulses, the endogenous chromophores, such as hemoglobin, generate a photoacoustic (PA) signal due to their optical absorption.20,21 In this procedure, the light energy is transformed into acoustic waves, and the efficacy of this conversion is often affected by the presence of noise arising from the surrounding background.22,23 Therefore, the PA signal is often mixed by background noise, including thermal-acoustic noise in the medium as well as the transducer and electronic noises.24 White Gaussian noise is one of the most common models for these types of randomly distributed thermal and electronic noise.25 However, there is another component of noise arising from the light attenuation phenomena, caused by scattering characteristics of the tissue.26 Furthermore, other types of noise disturb the PA signals, such as the fixed-pattern noise caused by electromagnetic interference. The combination of these different types of noise in the PA signal leads to a low signal-to-noise ratio (SNR) and results in a poor quality reconstructed PA image.27 – 30

15 May 2020 in Sensors
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YYYan Yan
Yan Yan
WJWuming Jing
Wuming Jing
MMMohammad Mehrmohammadi
Mohammad Mehrmohammadi
The next generation of intelligent robotic systems has been envisioned as micro-scale mobile and externally controllable robots. Visualization of such small size microrobots to track their motion in nontransparent medium such as human tissue remains a major challenge, limiting translation into clinical applications. Herein, we present a novel, non-invasive, real-time imaging method by integrating ultrasound (US) and photoacoustic (PA) imaging modalities for tracking and detecting the motion of a single microrobot in deep biological tissue. We developed and evaluated a prototyped PA-guided magnetic microrobot tracking system. The microrobots are fabricated using photoresist mixed with nickel (Ni) particles. The microrobot motion was controlled using an externally applied magnetic field. Our experimental results evaluated the capabilities of PA imaging in visualizing and tracking microrobots in opaque tissue and tissue-mimicking phantoms. The results also demonstrate the ability of PA imaging in detecting a microrobot with the sizes less than the minimum detectable size by US imaging (down to 50 µm). The spectroscopic PA imaging studies determined an optimal wavelength (700 nm) for imaging microrobots with embedded Ni particles in oxygenated (fresh) human blood. In addition, we examined the ability of PA imaging to detect the microrobots through a nontransparent tissue mimic and at a depth of 25 mm, where conventional optical methods are unable to be used in tracking the objects. These initial results demonstrate the feasibility of an integrated US and PA imaging method to push the boundaries of microrobot applications into translational applications.

3 March 2021 in PLOS ONE
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YYYan Yan
Yan Yan
MBMaryam Basij
Maryam Basij
Alpana GargAlpana Garg
Alpana Garg
AVAneesha Varrey
Aneesha Varrey
AAAli Alhousseini
Ali Alhousseini
MMMohammad Mehrmohammadi
Mohammad Mehrmohammadi
Objective: Cervical remodeling is an important component in determining the pathway of parturition; therefore, assessing changes in cervical tissue composition may provide information about the cervix’s status beyond the measurement of cervical length. Photoacoustic imaging is a non-invasive ultrasound-based technology that captures acoustic signals emitted by tissue components in response to laser pulses. This optical information allows for the determination of the collagen-to-water ratio (CWR). The purpose of this study was to compare the CWR evaluated by using spectroscopic photoacoustic (sPA) imaging in cervical samples obtained from pregnant and non-pregnant women.Methods: This cross-sectional study comprised cervical biopsies obtained at the time of hysterectomy (n = 8) and at the scheduled cesarean delivery in pregnant women at term who were not in labor (n = 8). The cervical CWR was analyzed using a fiber-optic light-delivery system integrated to an ultrasound probe. The photoacoustic signals were acquired within the range of wavelengths that cover the peak absorption of collagen and water. Differences in the CWR between cervical samples from pregnant and non-pregnant women were analyzed. Hematoxylin and eosin and Sirius Red stains were used to compare the collagen content of cervical samples in these two groups.Results: Eight cervix samples were obtained after hysterectomy, four from women ≤41 years of age and four from women ≥43 years of age; all cervical samples (n = 8) from pregnant women were obtained after 37 weeks of gestation at the time of cesarean section. The average CWR in cervical tissue samples from pregnant women was 18.7% (SD 7.5%), while in samples from non-pregnant women, it was 55.0% (SD 20.3%). There was a significantly higher CWR in the non-pregnant group compared to the pregnant group with a p-value <0.001. A subgroup analysis that compared the CWR in cervical samples from pregnant women and non-pregnant women ≤41 years of age (mean 46.3%, SD 23.1%) also showed a significantly higher CWR (p <0.01). Lower collagen content in the pregnancy group was confirmed by histological analysis, which revealed the loss of tissue composition, increased water content, and collagen degradation.Conclusion: The proposed bimodal ultrasound and sPA imaging system can provide information on the biochemical composition of cervical tissue in pregnant and non-pregnant women. Photoacoustic imaging showed a higher collagen content in cervical samples from non-pregnant women as compared to those from pregnant women, which matched with the histological analysis. This novel imaging method envisions a new potential for a sensitive diagnostic tool in the evaluation of cervical tissue composition.

6 December 2021 in Fetal Diagnosis and Therapy
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LULiaisan Uzianbaeva
Liaisan Uzianbaeva
YYYan Yan
Yan Yan
TJTanaya Joshi
Tanaya Joshi
NYNina Yin
Nina Yin
CHChaur-Dong Hsu
Chaur-Dong Hsu
MMMohammad Mehrmohammadi
Mohammad Mehrmohammadi
Fetal, perinatal, and neonatal asphyxia are vital health issues for the most vulnerable groups in human beings, including fetuses, newborns, and infants. Severe reduction in oxygen and blood supply to the fetal brain can cause hypoxic-ischemic encephalopathy (HIE), leading to long-term neurological disorders, including mental impairment and cerebral palsy. Such neurological disorders are major healthcare concerns. Therefore, there has been a continuous effort to develop clinically useful diagnostic tools for accurately and quantitatively measuring and monitoring blood and oxygen supply to the fetal and neonatal brain to avoid severe consequences of asphyxia HIE and neonatal encephalopathy. Major diagnostic technologies used for this purpose include fetal heart rate monitoring, fetus scalp blood sampling, ultrasound imaging, magnetic resonance imaging, X-ray computed tomography, and nuclear medicine. In addition, given the limitations and shortcomings of traditional diagnostic methods, emerging technologies such as near-infrared spectroscopy and photoacoustic imaging have also been introduced as stand-alone or complementary solutions to address this critical gap in fetal and neonatal care. This review provides a thorough overview of the traditional and emerging technologies for monitoring fetal and neonatal brain oxygenation status and describes their clinical utility, performance, advantages, and disadvantages.