Department of Geoinformatics, Cartography and Remote Sensing, Chair of Geomatics and Information Systems, Faculty of Geography and Regional Studies, University of Warsaw
Dr. Marlena Kycko
Department of Geoinformatics, Cartography and Remote Sensing, Chair of Geomatics and Information Systems, Faculty of Geography and Regional Studies, University of Warsaw
Remote detection and monitoring of the vegetation responses to stress became relevant for sustainable agriculture. Ongoing developments in optical remote sensing technologies have provided tools to increase our understanding of stress-related physiological processes. Therefore, this study aimed to provide an overview of the main spectral technologies and retrieval approaches for detecting crop stress in agriculture. Firstly, we present integrated views on: i) biotic and abiotic stress factors, the phases of stress, and respective plant responses, and ii) the affected traits, appropriate spectral domains and corresponding methods for measuring traits remotely. Secondly, representative results of a systematic literature analysis are highlighted, identifying the current status and possible future trends in stress detection and monitoring. Distinct plant responses occurring under shortterm, medium-term or severe chronic stress exposure can be captured with remote sensing due to specific light interaction processes, such as absorption and scattering manifested in the reflected radiance, i.e. visible (VIS), near infrared (NIR), shortwave infrared, and emitted radiance, i.e. solar-induced fluorescence and thermal infrared (TIR). From the analysis of 96 research papers, the following trends can be observed: increasing usage of satellite and unmanned aerial vehicle data in parallel with a shift in methods from simpler parametric approaches towards more advanced physically-based and hybrid models. Most study designs were largely driven by sensor availability and practical economic reasons, leading to the common usage of VIS-NIR-TIR sensor combinations. The majority of reviewed studies compared stress proxies calculated from single-source sensor domains rather than using data in a synergistic way. We identified new ways forward as guidance for improved synergistic usage of spectral domains for stress detection: (1) combined acquisition of data from multiple sensors for analysing multiple stress responses simultaneously (holistic view); (2) simultaneous retrieval of plant traits combining multi-domain radiative transfer models and machine learning methods; (3) assimilation of estimated plant traits from distinct spectral domains into integrated crop growth models. As a future outlook, we recommend combining multiple remote sensing data streams into crop model assimilation schemes to build up Digital Twins of agroecosystems, which may provide the most efficient way to detect the diversity of environmental and biotic stresses and thus enable respective management decisions.
Land cover information is essential in European Union spatial management, particularly that of invasive species, natural habitats, urbanization, and deforestation; therefore, the need for accurate and objective data and tools is critical. For this purpose, the European Union’s flagship program, the Corine Land Cover (CLC), was created. Intensive works are currently being carried out to prepare a new version of CLC+ by 2024. The geographical, climatic, and economic diversity of the European Union raises the challenge to verify various test areas’ methods and algorithms. Based on the Corine program’s precise guidelines, Sentinel-2 and Landsat 8 satellite images were tested to assess classification accuracy and regional and spatial development in three varied areas of Catalonia, Poland, and Romania. The method is dependent on two machine learning algorithms, Random Forest (RF) and Support Vector Machine (SVM). The bias of classifications was reduced using an iterative of randomized training, test, and verification pixels. The ease of the implementation of the used algorithms makes reproducing the results possible and comparable. The results show that an SVM with a radial kernel is the best classifier, followed by RF. The high accuracy classes that can be updated and classes that should be redefined are specified. The methodology’s potential can be used by developers of CLC+ products as a guideline for algorithms, sensors, and the possibilities and difficulties of classifying different CLC classes.
Vegetation productivity is a critical indicator of global ecosystem health and is impacted by human activities and climate change. A wide range of optical sensing platforms, from ground-based to airborne and satellite, provide spatially continuous information on terrestrial vegetation status and functioning. As optical Earth observation (EO) data are usually routinely acquired, vegetation can be monitored repeatedly over time, reflecting seasonal vegetation patterns and trends in vegetation productivity metrics. Such metrics include gross primary productivity, net primary productivity, biomass, or yield. To summarize current knowledge, in this paper we systematically reviewed time series (TS) literature for assessing state-of-the-art vegetation productivity monitoring approaches for different ecosystems based on optical remote sensing (RS) data. As the integration of solar-induced fluorescence (SIF) data in vegetation productivity processing chains has emerged as a promising source, we also include this relatively recent sensor modality. We define three methodological categories to derive productivity metrics from remotely sensed TS of vegetation indices or quantitative traits: (i) trend analysis and anomaly detection, (ii) land surface phenology, and (iii) integration and assimilation of TS-derived metrics into statistical and process-based dynamic vegetation models (DVMs). Although the majority of used TS data streams originate from data acquired from satellite platforms, TS data from aircraft and unoccupied aerial vehicles have found their way into productivity monitoring studies. To facilitate processing, we provide a list of common toolboxes for inferring productivity metrics and information from TS data. We further discuss validation strategies of the RS data derived productivity metrics: (1) using in situ measured data, such as yield; (2) sensor networks of distinct sensors, including spectroradiometers, flux towers, or phenological cameras; and (3) inter-comparison of different productivity metrics. Finally, we address current challenges and propose a conceptual framework for productivity metrics derivation, including fully integrated DVMs and radiative transfer models here labelled as “Digital Twin”. This novel framework meets the requirements of multiple ecosystems and enables both an improved understanding of vegetation temporal dynamics in response to climate and environmental drivers and enhances the accuracy of vegetation productivity monitoring.
Mountain forests are exposed to extreme conditions (e.g., strong winds and intense solar radiation) and various types of damage by insects such as bark beetles, which makes them very sensitive to climatic changes. Therefore, continuous monitoring is crucial, and remote-sensing techniques allow the monitoring of transboundary areas where a common policy is needed to protect and monitor the environment. In this study, we used Sentinel-2 and Landsat 8 open data to assess the forest stands classification of the UNESCO Krkonoše/Karkonosze Transboundary Biosphere Reserve, which is undergoing dynamic changes in recovering woodland vegetation due to an ecological disaster that led to damage and death of a large portion of the forests. Currently, in this protected area, dry big trunks and branches coexist with naturally occurring young forests. This heterogeneity generates mixes, which hinders the automation of classification. Thus, we used three machine learning algorithms—Random Forest (RF), Support Vector Machine (SVM), and Artificial Neural Network (ANN)—to classify dominant tree species (birch, beech, larch and spruce). The best results were obtained for the SVM RBF classifier, which offered an average median F1-score that oscillated around 67.2–91.5% depending on the species. The obtained maps, which were based on multispectral satellite images, were also compared with classifications made for the same area on the basis of hyperspectral APEX imagery (288 spectral bands with three-meter resolution), indicating high convergence in the recognition of woody species.
Introduction: Detecting and monitoring crop stress is crucial for ensuring sufficient and sustainable crop production. Recent advancements in unoccupied aerial vehicle (UAV) technology provide a promising approach to map key crop traits indicative of stress. While using single optical sensors mounted on UAVs could be sufficient to monitor crop status in a general sense, implementing multiple sensors that cover various spectral optical domains allow for a more precise characterization of the interactions between crops and biotic or abiotic stressors. Given the novelty of synergistic sensor technology for crop stress detection, standardized procedures outlining their optimal use are currently lacking. Materials and methods: This study explores the key aspects of acquiring high-quality multi-sensor data, including the importance of mission planning, sensor characteristics, and ancillary data. It also details essential data pre-processing steps like atmospheric correction and highlights best practices for data fusion and quality control. Results: Successful multi-sensor data acquisition depends on optimal timing, appropriate sensor calibration, and the use of ancillary data such as ground control points and weather station information. When fusing different sensor data it should be conducted at the level of physical units, with quality flags used to exclude unstable or biased measurements. The paper highlights the importance of using checklists, considering illumination conditions and conducting test flights for the detection of potential pitfalls. Conclusion: Multi-sensor campaigns require careful planning not to jeopardise the success of the campaigns. This paper provides practical information on how to combine different UAV-mounted optical sensors and discuss the proven scientific practices for image data acquisition and post-processing in the context of crop stress monitoring.
An unmanned aerial vehicle (UAV) as an alternative to manned aircrafts is an excellent, less invasive, safe tool, especially in sensitive polar regions. Here we used a fixed-wing UAV to collect data on seabird and pinniped populations in hardly accessible Antarctic areas. The implementation of an auto-piloted UAV equipped with a digital camera (Canon EOS 700D, 35 mm f/2.0 lens) allowed us to collect high-quality material applicable to a quantitative analysis of the fauna populations. A successful photogrammetric mission, at an altitude of 550 m above sea level, was accomplished during one Beyond Visual Line of Sight flight above hard-to-access Penguin Island and Turret Point Oasis (King George Island). Obtained selected RGB images were processed to generate a panoramic image stitch with resolution of 0.07 m ground sampling distance. A total of 4290 (SD = 33.08) breeding individuals of two penguin species, Adélie (Pygoscelis adeliae) and chinstrap (Pygoscelis antarcticus), 426 (SD = 7.78) individuals of the southern elephant seal (Mirounga leonina) and 6 individuals of the Weddell seal (Leptonychotes weddellii) were identified in both study areas. Additionally, 222 (SD = 2.0) individuals of the southern giant petrel (Macronectes giganteus) and 76 (SD = 1.0) of the Antarctic shag (Phalacrocorax atriceps bransfieldensis) in the Turret Point area were recognized. The presented observations on the natural history of the investigated fauna together with the available literature may be useful in future research on population trends. A comparison with available historical data for both investigated areas suggests a decrease of 68.29% in both penguin species in the 1980–2016 period. The presented results confirmed that UAVs are useful for remote census work for Antarctic seabirds.