Tilia species are valuable woody species due to their beautiful shape and role as honey trees. Somatic embryogenesis can be an alternative method for mass propagation of T. amurensis. However, the molecular mechanisms of T. amurensis somatic embryogenesis are yet to be known. Here, we conducted comparative transcriptional analysis during somatic embryogenesis of T. amurensis. RNA-Seq identified 1505 differentially expressed genes, including developmental regulatory genes. Auxin related genes such as YUC, AUX/IAA and ARF and signal transduction pathway related genes including LEA and SERK were differentially regulated during somatic embryogenesis. Also, B3 domain family (LEC2, FUS3), VAL and PKL, the regulatory transcription factors, were differentially expressed by somatic embryo developmental stages. Our results could provide plausible pathway of signaling somatic embryogenesis of T. amurensis, and serve an important resource for further studies in direct somatic embryogenesis in woody plants.

Growth and reproductive traits were assessed in seed stands of two native Indian tree species Tamarindus indica and Azadirachta indica. Positive correlation between growth (height and GBH) and reproductive traits (male and female contribution) were found in both species. Fertility was estimated from the flower and fruit production of individuals. Based on the fertility variation among individuals, parental balance, femaleness index and status number (N_s) were determined. The option of equal seed collection among individuals was also considered for estimating N_s. The percentage of fertile trees was higher in the high flowering year in both species. The best male contributing individuals also showed high female contribution (fruit production). The parental contribution in seed stands showed high deviation from expectation; 20% individuals contributed about 70% of male and female gametes in both species. Femaleness index showed that female and male contribution of individual tree was more balanced in the good flowering year, compared to the poor year. Coefficient of variation in male and female fertility was higher in the low flowering year resulting in high fertility variation among individuals and low status number. In T. indica, the female contribution was less variable compared to that of male fertility whereas in A. indica the female fertility variation was higher than that of male fertility. The relative status number (N_r= N_s/N) of the stands was lower for male and female fertility compared to the combined (male and female) fertility of individual trees.

Clonal differences in the number of male and female strobili were determined for five consecutive years in a clonal seed orchard of Pinus thunbergii in Korea. The effects of relatedness and clonal differences in reproductive development on gene diversity of seed (in terms of accumulated relatedness by status number) were estimated. While clonal differences were found, fertility variation was not large through all studied years. The orchard clones were divided into different regions and locations based on the geographical distribution and distance of natural stands that plus trees were selected from. Assuming that there was no relatedness among regions, locations and clones, the status number (N_s) was varied from 47.6 to 55.5 for five successive years. On average (pooling), N_s was 92% of census number (N). Assumed relatedness among regions, locations and/or clones decreased the status number. Effect of parental selection on relatedness and orchard management was also discussed.

Seed orchards are important seed resources for producing improved tree crops for future plantations, forest restoration, and forestry practices (i.e., gene conservation) and for transmitting current gene diversity to future generations. Seed orchards are a major sub-division in forest science. The establishment and management of a seed orchard involves many steps, from the selection of superior trees to the harvesting of a seed crop. Studying the trends and future directions of seed orchards using different analysis methods is critically important, especially to establish resistant forests via the production of climate-smart, biotic/abiotic-stress-resistant seedling materials. Published papers related to seed orchards should be analyzed to determine the current trends in this field and to contribute to its future directions. Bibliometric analysis has been used for different purposes in various scientific fields. However, it has not been performed for publications in seed orchards. This study was carried out to analyze the current trends of research on seed orchards and to determine the future directions of these orchards based on published papers. For these purposes, 1018 published papers were obtained from the Science Citation Index, Science Citation Index Expanded, and citation index databases of “Web of Science” using the keyword “seed orchard”. The papers were published between 1980 and 2022 and were subjected to bibliometric analysis based on the most prolific contributors, references, countries, and keywords. CiteSpace software 6.1 R6 was applied to visualize information about seed orchard research. The average number of citations per publication was 13.05, and the 4 H-Index of the publication set was 48. The most prolific contributors with the strongest citation bursts, the highest centrality, and the greatest numbers of published papers were from Canada, Sweden, South Korea, Finland, and Czech Republic, while Canada (186 published articles), the USA (140), and Sweden (115), together with China, Brazil, and Germany, were active countries, especially based on citations from recent years. The “keywords” of the papers were the core of the research. “Mating pattern”, “Swedish forestry”, “fertility variation”, “Hymenoscyphus fraxineus”, “threatened Pacific sandalwood”, “outbreeding depression”, “climate change”, “management”, and “growth”, together with others such as “genetic improvement” and “effective size”, were active study areas and keywords, based on results of the analysis. They also guided the literature search and inventory and classification of early studies and served as predictors for future studies. The results of this study are discussed based on the trends and future directions of the research and development of seed orchards.

Fertility variation, defined as a difference in the ability to create progeny (i.e., reproductive success) among individuals, was reviewed using the related available theoretical and practical literature in an attempt to contribute to and improve future studies on the subject. Fertility variation is a useful guide for various purposes such as gene conservation, seed production programs, forest genetic resource (i.e., seed sources) management, other forestry practices (e.g., regeneration), and evolutional and physiological studies. Many papers and proceedings have been published, including both theoretical and practical approaches, on how fertility variation has improved in the last two decades. Large variations in fertility were widely reported among populations within species and among species. We reviewed the literature and combined our diverse knowledge to examine fertility variations and their linkage parameters. Fertility variations and their related parameters (e.g., gene diversity, status number, effective parent number, parental–balance curves) estimated based on reproductive characteristics have been studied for many years using easy and cheap surveys that are used for different purposes in forest sciences. Their importance is increasing and their use is becoming more widespread because of these advantages, leading to improvements in research papers. While many research papers have recently been published on fertility variations and linkage parameters, a review paper has not been published to date. Therefore, a review paper is needed based on a literature survey and unpublished experience, as a guide for future studies.